Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3515 129 8e-25 >seq3515 Length=139295 Score = 129 bits (142), Expect = 8e-25 Identities = 307/460 (67%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 || |||||| || || || ||||| || || ||||| ||||| || || || || || Sbjct 85450 AGCCATAACGCCAGCCTTCTGATATTCTCCAACTCGTTTCTCGAAGAAGTTTGTCTTGCC 85391 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 49772 |||| || || || ||||||||||| || || |||| || || | |||| Sbjct 85390 ACCCAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTACACCTTTTCGT- 85332 Query 49773 TCCCAATTCAGAAATCAAT---CTATCCGCGACAAATTCTATATATGTTTTCATCATTTC 49829 | |||| || || |||| | ||| ||||||||||| |||||| ||||||| | Sbjct 85331 TACCAAG--AGCAACCAATAGGCGATCGGCGACAAATTCAATATATTGCTTCATCAGTGT 85274 Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 ||||| |||| || | || |||||| | || | ||| ||||| |||||| Sbjct 85273 GGCGTTCATGCCTAGGAGAGCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCC 85214 Query 49890 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 49949 || || || || ||||| | | ||| | || | | | ||| | ||| Sbjct 85213 AACAGCGTCGGTGATAATGTCCTTGATTATTTGCTTGCTGGCTCGGTGCTTAAGATGCGA 85154 Query 49950 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 50009 || || |||||| || || ||||| |||||| || | || ||||||||||| Sbjct 85153 GTGCAACAGACATGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTGGA 85094 Query 50010 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCC 50069 || ||||| |||||||| || |||||||| || ||||| || || || ||||| | || Sbjct 85093 GAAGGTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACC 85034 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGC-AAAGGCAACAAG 50108 |||||||| || || || || || |||| || |||| Sbjct 85033 GCTGAAGAAGATGCCCTCCACAGCAGCGAAAGCCACCAAG 84994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718234960561160