Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3515 87.8 2e-12 >seq3515 Length=139295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/280 (68%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| ||||||| || | || |||||||||| || || || || ||||| Sbjct 84816 ATGTAGCTATCAATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGG 84757 Query 13990 AAACCATAAAAACATCTAGCTTCTG--ACCATTGTACCTCCGAGTAAAATCTTTCTGCCA 14047 || ||||| || || | ||| || | ||| || ||||| | || | || || Sbjct 84756 AATCCATAGAAGCAACGAGCCTCCGGAACC--TGAACCTCGCCGCTGAAACGCTCAAGCA 84699 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 |||||||||| ||||| || ||| ||| ||||| |||||||| |||| | || |||| Sbjct 84698 AGTTTTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGT 84639 Query 14108 ATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 ||| ||| || | | | | | || ||||||||| || ||||| || ||||| | | Sbjct 84638 ATTTCTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCT 84579 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 | || | ||||| ||| || | || || || ||||| Sbjct 84578 CTTCGGCCGTCCAGAAAGAGGCTTCGGCCTTCTTGTACAT 84539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478566252485160