Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2339 84.2 2e-11 >seq2339 Length=71557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||| | ||| | ||||| ||||| || | ||||||||| | Sbjct 18253 CCACCACGCAGACGAAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAATCGCTC 18312 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| || || ||||||||||| | ||| || || |||| || Sbjct 18313 AGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGG 18372 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| ||| |||||| || | | ||||| || || || Sbjct 18373 ATGCCCTCCTTGTC-CTGAATCTTGGATTTGACATTGTCGATGGTGTCAGAAGATTCCAC 18431 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || | || || |||||||||||||| Sbjct 18432 TTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 18479 Score = 82.4 bits (90), Expect = 6e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||| ||||| | ||||| | || |||| || ||||| || || Sbjct 18745 TCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAG 18804 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||||||| ||||| | || | |||||| || || ||| ||| | ||||| | Sbjct 18805 ATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTC-CTGAATCTTCGACTTGACATT 18863 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | |||||| || | || || || |||||||| | ||| || || Sbjct 18864 GTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 18923 Query 43098 AA 43099 || Sbjct 18924 AA 18925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381352081906602