Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2389 159 5e-34 seq3515 156 6e-33 seq2900 86.0 9e-12 >seq2389 Length=61879 Score = 159 bits (176), Expect = 5e-34 Identities = 315/459 (69%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| ||||||||||| || || || || || | ||| |||| | || |||| Sbjct 41464 GATACGTTGACCAGGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTATCTCGAGCCTT 41523 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| || || ||||||||| | || |||| || ||| ||| ||||| | Sbjct 41524 GGCACGCAGATGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGAAAACC 41583 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AA 97042 | || | ||| | || ||| || ||| | |||||| | ||||||||||||||| || Sbjct 41584 GTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAA 41643 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || | || | |||| ||| ||||| ||| || || ||||| ||| | ||||||| Sbjct 41644 AGAACGGGG--ATTGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGATTGCTA 41701 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161 ||||| ||||||||||| ||| | || |||| |||||||| || |||| Sbjct 41702 TGGCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCAAGAC 41761 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| ||| | |||| || ||| | ||||| | | | ||| ||| || || | Sbjct 41762 TATTCG-TGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACAGAAACGGGCAAC 41819 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | || || ||||||||| || || | || |||||||| || |||| ||| Sbjct 41820 CCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACC 41879 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || ||||||| ||||||||||| || | |||||| Sbjct 41880 ATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTAC 41918 >seq3515 Length=139295 Score = 156 bits (172), Expect = 6e-33 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| | |||||||| ||||| | ||||| || ||||||| ||||||| |||||||| Sbjct 84530 ATTTGGCAGATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 84589 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||| || |||||||| | | ||| ||| || ||| | | || || || Sbjct 84590 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 84649 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACACG 125197 ||||||||||| |||||||| | || || || || ||||| || || || |||| || Sbjct 84650 CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGA-GCG 84708 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| ||| | |||| |||| ||| ||||| || |||||||| ||||||| Sbjct 84709 TTTCAGCGGCGAGGTTCAGGTTCCGGAGG-CTCGTTGCTTCTATGGATTCCAGATCATGA 84767 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | ||||| | ||||| |||| |||||| |||||||| | ||||| Sbjct 84768 TGGAGAATATTCACTCTGAAACATACTCTCTCCTGATTGATAGCTACAT 84816 Score = 111 bits (122), Expect = 2e-19 Identities = 332/503 (66%), Gaps = 27/503 (5%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG---TAC 125417 || || ||||| || | |||| ||||| ||||| | | |||||| ||| | | Sbjct 84929 ATCCGGAAAAAAGCAGACTGGGCCATTCGTTGGAT---TCAGGACAAGGATTCCAGCTTC 84985 Query 125418 GCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCG 125477 ||| | | ||||||| ||||| || || |||||||||||||| ||| ||||| Sbjct 84986 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCC 85045 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 | || || |||||||||||||| || || |||||||| || || | ||||| || Sbjct 85046 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCCAACGAACTT 85105 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTG 125597 || || || || ||||| | ||| ||||||| ||| ||||| | ||| | Sbjct 85106 ATCTCCCGTGATGAGGGTTTGCACACAGACTTTG-CAT--GTCTGTTGC---ACT---CG 85156 Query 125598 CGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGG 125657 | || || | || ||||| | ||| ||| ||||| | ||||| || || | Sbjct 85157 CATCTTAAGCACCGAGCCAGCAAGCAAATAATCAAGGACATTATCACCGACGCTGTTGGC 85216 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAA 125716 || || ||||||||| | ||||| | || || || || | | ||||||||| || Sbjct 85217 ATTGAGCAAGAGTTTTTGACCGAGGCTCTGCC-GTGTGCTCTCCTAGGCATGAACGCCAC 85275 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGG- 125773 || ||| | || || || ||||| || ||||| ||| || |||| |||| Sbjct 85276 ACTGATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTG-----GTTGCTCTTGGT 85330 Query 125774 --CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 | ||| | ||||| || || ||||| ||||||||| | ||| || | | Sbjct 85331 AACGAAAAGGTGTACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGT 85390 Query 125832 GGTAAGACCAACTTTTTCGAGAA 125854 || ||||| ||||| |||||||| Sbjct 85391 GGCAAGACAAACTTCTTCGAGAA 85413 >seq2900 Length=85692 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 126684 AATGTAGTCTACGATGCGTTCAATGTCACACTCTTTGACACCACGGGTCGTCACCGCAGG 126743 |||||| | ||| ||| |||| ||||| ||| || ||||||| |||||| || || Sbjct 23938 AATGTACTTGGCGACGCGCTCAAAGTCACTCTCACCGAAACCACGGCTCGTCATGGCTGG 23879 Query 126744 AGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGTTTTT 126803 ||||||| | ||| |||| || | | |||||||||||| ||||| | | ||| || Sbjct 23878 TGTACCGATACGGATACCGCAGGGGGTCAAAGCGCTCTTGTCACCGGGGATAGAGTTCTT 23819 Query 126804 GTTGCAAGCGAT 126815 ||||||||| || Sbjct 23818 GTTGCAAGCAAT 23807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741024286848440