Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2339 86.0 5e-12 >seq2339 Length=71557 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| | |||| || || || |||||||||||||| || | | ||||||| | || Sbjct 18276 ATGCAAGGTGCTTTCCTTCTGGATGTTGTAATCGCTCAGCGTGCGGCCGTCTTCCAGCTG 18335 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || || | || | ||||| |||||| || || || || ||||| ||| || Sbjct 18336 CTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 18395 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || ||||| || | ||| || || |||||||| || || || || Sbjct 18396 GGATTTGACATTGTCGATGGTGTCAGAAGATTCCACTTCCAAGGTAATAGTCTTTCCAGT 18455 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||||||||||||| Sbjct 18456 CAAGGTCTTGACAAAAATTTGCATA 18480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362162563411629