Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq2695 91.5 1e-13 >seq2695 Length=99469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5591 ATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAAC 5650 |||| ||||| | || ||||||| ||| | | | || ||| | | | | |||||| Sbjct 43713 ATCAATTGCGCCACTCTGTCGCCCTCCTTGATCCCAAAGTCGGTCTCGGCATGGTTGAAA 43772 Query 5651 AGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATG 5710 |||| || || | |||||||||||||||||| || || |||||||| |||||| Sbjct 43773 AGCAGGACCTTGACTTGGCCGCGGTAGTCGGCGTCAATGACTCCCGCGCCAGTATCGATG 43832 Query 5711 AAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGT 5753 || || ||| || || || ||||||||||| | |||||||| Sbjct 43833 AAATGTTTGCTTGCGAGACCAGAGCGGGGAGCAATGCGGCCGT 43875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430034645585528