Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2753 93.3 4e-14 seq2339 91.5 1e-13 >seq2753 Length=281039 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || ||||||||||| || |||||||| || || Sbjct 118009 ACCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC-GC 117951 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | || || | ||||| ||||||||||| | | || | || ||||| ||| | Sbjct 117950 TCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGG 117891 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTC 48675 | | | ||||||||| || || ||||| | | || ||||| |||| |||||| Sbjct 117890 GAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGACTC 117833 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 | ||| | || || || || || ||||| ||||| || |||||||||||| || || Sbjct 117832 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCATCTTGCCT 117775 >seq2339 Length=71557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 |||||||| |||||| ||||||||||| |||| || || || | ||||| ||||| Sbjct 19037 TGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAG-AAAGGGTGCGGCCATCCTCAAGCTG 19095 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | |||| ||||||||| || ||| | | ||||| ||| ||| || Sbjct 19096 CTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATCCTGAATCTT 19155 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||||| | | || || || | ||||| ||||| || ||||| || ||||| Sbjct 19156 CGACTTGACATTGTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGT 19215 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || || ||||| Sbjct 19216 GAGGGTCTTGACGAAGATTTGCAT 19239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421231849957769