Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2753 109 5e-19 seq2339 107 2e-18 >seq2753 Length=281039 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || ||||| || | ||| || ||||||| ||| | | Sbjct 117996 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 117937 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | || |||||| || || ||||| || || ||| Sbjct 117936 TCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTG 117877 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||||||| | ||| ||||| | || || |||| ||||| Sbjct 117876 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 117817 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| || || |||||||| Sbjct 117816 GTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 117782 >seq2339 Length=71557 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | |||||||||||| || | || || ||| | ||| | ||| |||||||| Sbjct 18732 GTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCTTCCAGCTG 18791 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| |||| |||||||| ||||| |||||||| ||||| | ||| || Sbjct 18792 CTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTT 18851 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 | |||||| | ||| ||||| | | ||||| |||| |||||||| ||||| || Sbjct 18852 CGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGT 18911 Query 94984 AAGAGTTTTCACAA 94997 | ||| || |||| Sbjct 18912 CAAAGTCTTGACAA 18925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||| || |||| ||||| |||| |||||| ||||| || | Sbjct 18468 AAAAATTTGCATACCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAAT 18527 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || ||| || ||| | |||||| ||||| || ||| ||||||| | || || Sbjct 18528 ATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTG 18587 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || || ||||| ||||| || || | ||| || | ||| || ||| || || Sbjct 18588 TTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATC 18647 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | || || || || ||||| | ||| || || ||||||||||| Sbjct 18648 CGAAGATTCGACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448270079880840