Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1847 172 9e-39 seq1850 170 3e-38 >seq1847 Length=108247 Score = 172 bits (190), Expect = 9e-39 Identities = 199/263 (76%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| |||| |||||| || |||||||| || ||||||||||| |||| Sbjct 29800 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 29858 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| |||||||| ||||||||| |||| | || | || ||||||| Sbjct 29859 TTCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGCCATGATTTACGAAGAGA 29918 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACC 16609 ||| ||| || |||| ||||| | || |||| ||||||| || || || || Sbjct 29919 CTCGCACTGTCTTAAAGACTTTCCTTGAAGGTGTCATCCGTGATGCTGTTACA-TACACA 29977 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || ||||| ||||| ||||| ||||| || | || |||| ||||| | || || ||| Sbjct 29978 GAACACGCCAAACGAAAGACCGTCACGTCTCTCGACGTCGTGTATGCGCTAAAGCGACAA 30037 Query 16670 GGCCGTAAGATTTATGGTTTTGG 16692 ||||||| | ||||| || || Sbjct 30038 GGCCGTACCCTATATGGATTCGG 30060 >seq1850 Length=130078 Score = 170 bits (188), Expect = 3e-38 Identities = 200/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| ||||| Sbjct 27777 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 27719 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| | || | || |||| ||||||| Sbjct 27718 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAAGAGAC 27659 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| ||||||| || || || | |||||| || ||| || || Sbjct 27658 CCGCACTGTCCTCAAGACCTTCCTCGAGGGTGTCATTCGTGATGCCGTCACCTACACTGA 27599 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||||| | || | ||||| || |||| || || || Sbjct 27598 GCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTTGTCTACGCTCTGAAGCGACAGGG 27539 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 27538 CCGCACCCTGTACGGTTTCGGTGGTTAA 27511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071753976917