Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3515 120 4e-22 >seq3515 Length=139295 Score = 120 bits (132), Expect = 4e-22 Identities = 300/453 (66%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 || |||||| || || || ||||| || || ||||| ||||| || || || || || Sbjct 85450 AGCCATAACGCCAGCCTTCTGATATTCTCCAACTCGTTTCTCGAAGAAGTTTGTCTTGCC 85391 Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116 |||| || || || ||||||||||| || || |||| || || | |||| Sbjct 85390 ACCCAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTACACCTTTTCGT- 85332 Query 33117 TCCCAATTCAGAAATCAAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTC 33173 | |||| || || |||| | ||| ||||| ||||| |||||| ||||||| | Sbjct 85331 TACCAAG--AGCAACCAATAGGCGATCGGCGACAAATTCAATATATTGCTTCATCAGTGT 85274 Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 ||||| |||| || | || |||||| | || | ||| ||||| |||||| Sbjct 85273 GGCGTTCATGCCTAGGAGAGCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCC 85214 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTT 33293 || || || || ||||| | | ||| | || | | | ||| | ||| Sbjct 85213 AACAGCGTCGGTGATAATGTCCTTGATTATTTGCTTGCTGGCTCGGTGCTTAAGATGCGA 85154 Query 33294 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 33353 || || |||||| || || ||||| |||||| || | || ||||||||||| Sbjct 85153 GTGCAACAGACATGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTGGA 85094 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33413 || ||||| |||||||| || |||||||| || ||||| || || || || || | || Sbjct 85093 GAAGGTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACC 85034 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 |||||||| || || || ||||| || || Sbjct 85033 GCTGAAGAAGATGCCCTCCACAGCAGCGAAAGC 85001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622917851400040