Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2389 383 4e-101 >seq2389 Length=61879 Score = 383 bits (424), Expect = 4e-101 Identities = 1080/1634 (66%), Gaps = 42/1634 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| || || || | | ||| |||||||| Sbjct 41205 TTCACCCACGCCTCACCTACACTCTTCAACGCCGGTACCCCCCAATGTCAGCTGTCTTCT 41264 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | | ||||||||||| ||| || ||||||| ||||| || |||| Sbjct 41265 TGTTTCCTAGTCGACATGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACC 41324 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || || || || || | | || ||||| | ||||| Sbjct 41325 TGTGCCATGATCTCCAAGATGGCTGGTGGTATCGGCTTGAACG-TCCACCGCATCCGTGC 41383 Query 363726 -ACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 || | | ||| ||| |||||| | || | | || || || | ||||||||||| Sbjct 41384 TACCGG-CTCTTATATTGCCGGCACCAACGGCACA-TCCAACGGCATCATTCCCATGCTT 41441 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 ||||| || |||| ||||| || ||||| |||||||| || ||||| || || Sbjct 41442 CGTGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGCAACAAGCGACCTGGTGCA 41501 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || |||||||||||| || || ||| | ||||| |||||||| | || || Sbjct 41502 TTTGCCATCTATCTCGAGCCTTGGCACGCAGATGTGTTTGACTTTCTTGATTTGCGAAAG 41561 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||| || || || ||| ||||| || || || ||| ||| || ||| | | || Sbjct 41562 AACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGAT 41621 Query 363964 CATTTTATGAAGCGCGTGG--AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 | || ||||||||||| | | | | | | ||||| | ||| | || || |||| | Sbjct 41622 CTCTTCATGAAGCGCGTCGAAAAGAACG--GGGATTGGACCCTCATGTGTCCCAACGAGT 41679 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || | ||| | || || || | || ||||| ||||| |||||||| Sbjct 41680 GCCCCGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGC 41739 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 ||||| | || ||||| |||| || |||||||| |||| ||||| | || | Sbjct 41740 GTGAGGGCCGTGGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGT 41799 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| || || || | |||| |||| ||||||| ||| | |||||| | ||| || Sbjct 41800 CCCAGACAGAAACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCA 41859 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| || || |||| |||| |||||| || || ||||| ||||| ||| Sbjct 41860 ACCAGAAGAACCTGGGAACCATTC-GCAGCTCCAACCTGTGCACGGAGATCATTGAGTAC 41918 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT- 364319 || || || ||| ||| || || ||| | || || | || ||||| || ||||| Sbjct 41919 TGTGCCCCTGATGAGGTTGCTGTGTGCAACTTGGCCTCTCTTGCTCTTCCTGCCTTTGTC 41978 Query 364320 -----AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCA--TGCTA 364372 ||||| || | ||| |||| | || | || || || ||| || | Sbjct 41979 GACTACAAAGAAGGCCGCTACGACTTCCAGAAGCTCCACGAGGTCAC---TCAAGTGGTC 42035 Query 364373 CT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG---- 364426 | | || ||| ||||| | || || || |||| || ||| || || || Sbjct 42036 GTCCGTAACCTCAACAAGATCATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAAC 42095 Query 364427 AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTT 364486 ||| || ||||| ||||| || || ||| ||||||| ||||| || || |||| || Sbjct 42096 AGC-----AACATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTT 42150 Query 364487 TTATGATGCTC--AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 || | ||||| ||| | || || || || || || |||| || || ||| |||| Sbjct 42151 TTCT--TGCTCTGCGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGAT 42208 Query 364545 CTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGG-CAAAAACCAAGG 364603 ||| || || || || || || |||| || || ||| ||| |||| | ||| | Sbjct 42209 CTTCGAGACCATCTACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAA-G 42267 Query 364604 GAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTAT 364663 | |||||||| | |||| || || ||| | || | | ||||| || | | Sbjct 42268 GCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCGGAAGGTATTCTTCAGTTCGACATGT 42327 Query 364664 GGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAG 364722 ||||||||| ||| |||| ||| | ||||| | || | | | | | ||| || Sbjct 42328 GGAATGTCAAGCCTTCTGAGTTGTGGGAGTGGGACAATCTGAAGGAGC-AGATCAAGGAG 42386 Query 364723 CATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || |||| ||||||||| | | || ||||||||||| || || || | || || Sbjct 42387 CACGGTATTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCCACCTCGCAAATT 42446 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || || ||||| |||||||| || || | || ||| |||| ||||| || | Sbjct 42447 CTGGGTAACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTG 42506 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 | || ||||| | ||| || || | || |||||||||| ||| || || Sbjct 42507 GCTGGTGAATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTC 42566 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| || |||||||||| ||||| |||| || ||||| | |||||||| || Sbjct 42567 TGGTCGGATGCCATGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACATCCCC 42626 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT 365022 | || | || | ||| || | ||||| ||||| ||||| ||||| ||| | Sbjct 42627 AATATCCCCGCCGACATCAAGGCTCTCTACAAGACCGTTTGGGAGATTTCTCAGCGTCAT 42686 Query 365023 CTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTA 365082 | || | |||||||||||||||||||| |||||| ||| ||||||| | ||||| Sbjct 42687 GTTATCCAGATGGCGGCCGATCGCGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACGTT 42746 Query 365083 TTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCC 365142 ||||| | || || | |||| | || || ||||| || || ||||| | Sbjct 42747 CACATGAAGGATCCTACTATGGGCAAGATCACCTCTATGCACTTTGCTGGCTGGAAGTTG 42806 Query 365143 GGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 42807 GGTCTCAAGACGGG 42820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303290660647358