Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2339 111 1e-19 >seq2339 Length=71557 Score = 111 bits (122), Expect = 1e-19 Identities = 147/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| ||| || || || || || ||||| | || ||| | || |||||| || | Sbjct 18934 ATGCAACAGTT-GTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 18876 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 18875 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAG 18816 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||| | || |||||||| || ||||||| | | | || ||| || || Sbjct 18815 CAGCGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTCTCTCCGACTACAAT 18756 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || |||||||| |||| Sbjct 18755 ATTCAGAAGGAATCTACTCTTCA 18733 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || |||||||| | |||||| | ||||| || | Sbjct 18479 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTGGAATCTTCT 18420 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| || ||||| |||||||| || Sbjct 18419 GACACCATCGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 18360 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || |||| |||| | ||| ||||| || ||||| | | | | | |||||||| ||| Sbjct 18359 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGATTACAAC 18300 Query 24171 ATTCAAAAAGAA 24182 || || || ||| Sbjct 18299 ATCCAGAAGGAA 18288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429916251024195