Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2389 275 6e-69 seq2753 125 7e-24 seq2339 123 2e-23 seq2517 113 4e-20 >seq2389 Length=61879 Score = 275 bits (304), Expect = 6e-69 Identities = 929/1436 (65%), Gaps = 27/1436 (2%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| || || || ||||| ||||| ||| || | ||| |||||| | || Sbjct 42529 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 42470 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| |||| || || ||||| ||||| | ||| | |||||||||||| || | | Sbjct 42469 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGC 42410 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || || ||||| | ||||||| |||||| | ||||| || | |||| ||||| Sbjct 42409 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 42350 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 | | || ||| | || | |||||||||| |||| | ||| || || |||||| | Sbjct 42349 AACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAATACCTTCCGAGGCGGGAGAG 42290 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 || | |||| | ||| ||| |||||| ||||| | || ||| || Sbjct 42289 CCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCA 42230 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 || || || |||||| || ||| |||||||| || || |||| | Sbjct 42229 GCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAG 42170 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 ||||||||||| | |||||| ||||| || ||||| | || || |||||||| ||| Sbjct 42169 GGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGA 42110 Query 145478 TGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTA 145537 ||| ||||||||| | | ||| ||| || || || | || || || || || Sbjct 42109 TGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTG 42050 Query 145538 TTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCC 145597 || | ||| || || || || | || | | | | ||| | ||||| | || | Sbjct 42049 TTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT 41990 Query 145598 TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCC 145657 || | | | ||| || | | || | || ||||| || || || || ||| Sbjct 41989 TCTTTGTAGTCGACAAAGGCAGGAAGAGCAAGAGAGGCCAAGTTGCACACAGCAACCTCA 41930 Query 145658 TCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGA 145717 || | | | | ||| | | |||||| | ||||| ||| | ||||||||||| Sbjct 41929 TCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGG 41870 Query 145718 TTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTC 145777 || | ||| || || || |||||||| || |||||||| ||||| | || ||| || Sbjct 41869 TTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTT 41810 Query 145778 TCCACCTGCGTCTCCACGATAAAACGGTGCAAG---TCCTGCGCACGCACCTGCTGCTGG 145834 || ||| | ||| | ||| | || | || | ||| ||||| | || || Sbjct 41809 TCTGTCTGGGACTCGAGGATGGA---GTACCAGAGCTTCTGGGCACGAATAGTCTTGCGG 41753 Query 145835 TAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCG 145894 |||||||| || || ||| |||||| |||||||| | || |||||||| Sbjct 41752 CCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCA 41693 Query 145895 GACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGC 145954 | ||||||||| |||| |||||||||||| || | ||| | ||||| | ||||||| Sbjct 41692 GCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGC 41633 Query 145955 TCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCG----CGCTTTGCAATC 146010 | ||| || | |||||| | |||||| || | | |||||| || ||| | || Sbjct 41632 TTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTC-TTC 41574 Query 146011 CTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTC 146070 || | | ||||| ||||| ||| | | | | || |||||||| || || Sbjct 41573 CTTGCCGTGGTTCTTTCG---CAAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTC 41517 Query 146071 AATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTACCAT 146127 | ||||| ||| | || || ||| ||||| |||||||| |||| | | | Sbjct 41516 GAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGT 41457 Query 146128 GTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTAT 146187 |||||| ||||| || | |||||| || |||| ||| | |||||| || | || Sbjct 41456 GTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAAT 41397 Query 146188 TCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCGTACTTGG 146246 | |||| | || | || || || |||| ||||| ||| || ||| | ||||| Sbjct 41396 ATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCAT-CTTGG 41338 Query 146247 ATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAAT 146304 | || ||| ||| ||| || |||||||| ||||||||||| ||| |||| || Sbjct 41337 AGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTC--AT 41280 Query 146305 GCCGAGCAGAAAGCACGAGCACATCTGCGCCAT--CGGCGTCCCCGCCGAGAACAACGTC 146362 | ||| || || || || ||| || | ||| || || || || ||| | || Sbjct 41279 GTCGACTAGGAAACAAGAAGACAGCT--GACATTGGGGGGTACCGGCGTTGAAGAGTGTA 41222 Query 146363 GGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGA 146422 || ||||| || || | || | | ||| | | || ||||| | | || | | Sbjct 41221 GGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTTTCCAAAACGCGCTCA 41162 Query 146423 ATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTC 146478 |||| ||| || ||| || | || |||||||| | |||||| || || ||||| Sbjct 41161 ATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTC 41106 >seq2753 Length=281039 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| || || | ||| |||||| || |||||||| |||||| Sbjct 118008 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 117949 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | || ||||||||||| || Sbjct 117948 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 117889 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 117888 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 117829 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || ||||| |||||||||||||| Sbjct 117828 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 117782 >seq2339 Length=71557 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| ||||||||||| || | |||||| ||||| |||||||| || Sbjct 19043 GTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCA 19102 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||||| |||||||||||| || |||||||| || || || || ||| |||| Sbjct 19103 GCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATCCTGAATCTTCGACTTG 19162 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||| || | ||||||| |||| |||| ||| || ||||| || || Sbjct 19163 ACATTGTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGTC 19222 Query 131218 TTTACGAAAATCTGCATGACT 131238 || ||||| || |||||| || Sbjct 19223 TTGACGAAGATTTGCATGGCT 19243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| ||||| ||||| ||| | || || || || ||||||||||| Sbjct 18739 GTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCTTCCAGCTGCTTGCCA 18798 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || |||||||| || |||||||| ||||| ||||| || ||| |||| Sbjct 18799 GCGAAGATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTCGACTTG 18858 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| |||||||| || | ||| | ||| || ||||| | ||| Sbjct 18859 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 18918 Query 131218 TTTAC 131222 || || Sbjct 18919 TTGAC 18923 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | ||| | ||| ||||| || ||||||||||||||| Sbjct 18253 CCACCACGCAGACGAAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAATCGCTC 18312 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| || || | || | || |||||||| |||||| Sbjct 18313 AGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGG 18372 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 18373 ATGCCCTCCTTGTC 18386 >seq2517 Length=100120 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||||||||| ||| || ||| || |||||| ||||||||||| ||| ||| Sbjct 66511 CCTTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGA 66452 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || || || || || ||||| |||||| ||||| | | Sbjct 66451 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGT 66392 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||| | ||| || || || ||||| || |||| Sbjct 66391 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGA 66332 Query 131225 AA 131226 || Sbjct 66331 AA 66330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471990562296960