Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2339 116 3e-21 >seq2339 Length=71557 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | || ||| | ||||| || || || Sbjct 18707 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 18648 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | || | ||| || || ||||| ||||| |||||||| Sbjct 18647 GATACGATCGATAATGTAAAGTCTAAGATTCAA-GATAAGGAAGGCATTCCCCCTGACCA 18589 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| |||| |||||||| || || | || |||| || ||| || ||| ||||| Sbjct 18588 ACAGCGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAA 18529 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || ||||| || || Sbjct 18528 TATTCAGAAGGAGTCTACTCTGCATTTGGTCCT 18496 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| || || | || || | |||||||| || ||| Sbjct 18479 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTGGAATCTTCT 18420 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || || | || | ||| ||||| || || || || || ||| Sbjct 18419 GACACCATCGA--CAATGTCAAATCCAAGATTCAG-GACAAGGAGGGCATCCCTCCCGAC 18363 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||||||||| || || | ||||| | ||||| || |||||||| Sbjct 18362 CAGCAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGATTAC 18303 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||| ||| | ||| | ||||| Sbjct 18302 AACATCCAGAAGGAAAGCACCTTGCATCTCGTGCT 18268 Score = 107 bits (118), Expect = 2e-18 Identities = 151/206 (73%), Gaps = 7/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||| | |||| |||||||||||||| || ||||||| | || || ||||| || Sbjct 18934 ATGCAAC-AGTTGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 18876 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| ||||| || || ||||| Sbjct 18875 GACACCATCGA--CAATGTCAAGTCGAAGATTCAG-GACAAGGAAGGTATCCCTCCTGAT 18819 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || ||||| || | ||||||| || ||| | ||| ||| Sbjct 18818 CAGCAGCGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTCTCTCCGACTAC 18759 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 |||||||| || ||||| || || || Sbjct 18758 AATATTCAGAAGGAATCTACTCTTCA 18733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || |||| || |||| || ||||||||| Sbjct 19239 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 19180 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || ||| | || | ||| || || || || || || |||||| Sbjct 19179 GACACTATTGA--CAATGTCAAGTCGAAGATTCA-GGATAAGGAGGGAATCCCGCCTGAC 19123 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || || || || | || |||| ||||| | || ||| Sbjct 19122 CAGCAGCGTCTAATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCTGACTAC 19063 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || || || || || Sbjct 19062 AACATTCAGAAGGAGTCAACACTTCA 19037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433308095213735