Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3562 147 4e-30 seq248 102 2e-16 >seq3562 Length=52523 Score = 147 bits (162), Expect = 4e-30 Identities = 436/670 (65%), Gaps = 7/670 (1%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| |||||||||||||||||||| ||| | |||| ||||| || | Sbjct 33624 GTCGGCTCGCTGTCTGGTGGTTGGAAGATGAAGCTCGCCTTGGCTCGTGCCATGCTTAGG 33683 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || || || || || || ||||| || | ||| | ||||| | ||| Sbjct 33684 AAAGCCGACGTGCTTCTCCTCGACGAACCTACCAATCATCTCGACGTCGCCAACATCGCC 33743 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | || || | | |||||||| ||||||||| Sbjct 33744 TGGCTGGAGAACTACCTCAAGACTCATCCAAACATCACCAGTCTCATTGTTTCTCACGAC 33803 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || || ||||| || || | | | |||| ||||| |||| || |||||| Sbjct 33804 TCCGGGTTCCTGGACAATGTCACCACGGACATCTACCACTACGAGCCCAACAAGAAGCTG 33863 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTAC 279995 | ||| ||||||||| |||| || |||| || || || ||| ||||| Sbjct 33864 GCGTGCTACAAGGGCAACCTGGCTGCCTTTGTGGAGGTCCGTCCCGAAGCGAAGTCCTAC 33923 Query 279996 TATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGC 280055 || |||| | | ||| || | ||| | |||||| || || |||| ||| Sbjct 33924 TACACCCTGTCTGCCTCCAACGTCCAGTTCAAGTTCCCTCCTCCGGGAATTCTCACAGGC 33983 Query 280056 ATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAAT 280115 ||| ||| || || || ||||| | | ||| || | | || ||||| Sbjct 33984 GTCAAGTCACAGACGCGAGCCATCATTCGCATGAGCAACGTGTCGTACACGTACCCCAA- 34042 Query 280116 GGCCCCAACATCTTCAGCAGT-----GTCAACTCGCAGGTTTCTATGAACTCACGGATTG 280170 |||||||| | || || || ||| || ||| | ||| || || || | | Sbjct 34043 GGCCCCAAAGCCCTC-GCTGTCCGAAGTCTCCTGTCAGCTGTCTCTGTCTTCTCGTGTGG 34101 Query 280171 GTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA 280230 ||||||| ||||| |||||||| ||||| ||||| ||||| | || || || || | Sbjct 34102 CCATCATTGGGCCCAACGGTGCGGGCAAGTCCACCCTCATCAAGTTGCTCACCGGTGAAA 34161 Query 280231 CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTC 280290 | |||| || || ||||||||||||| |||| || | |||| || | Sbjct 34162 GCATCCCCACCACAGGCAAAGTCGAGAAGCATCCCAACCTGCGCATCGGTTACATCAAGC 34221 Query 280291 AGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGT 280350 |||||||| | | ||| | |||| ||||| || | |||||| ||||| ||| | || | Sbjct 34222 AGCACGCTCTGGAGCACGTGGAGATGCACCTTGAGAAGACTCCGAACCAGTACCTCCAAT 34281 Query 280351 GGCGCTATGC 280360 |||| ||||| Sbjct 34282 GGCGATATGC 34291 >seq248 Length=276931 Score = 102 bits (112), Expect = 2e-16 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| ||| ||||||||||| ||||| || ||||||||||| ||||| || || Sbjct 210193 TCTCGTATTGCTGTGATTGGACCCAACGGTGCTGGCAAGTCTACCCTTATCAATGTTTTG 210252 Query 280221 ACTGGCGAGACCCAGGCC-ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 ||||| ||| | || || || |||| ||| |||| ||||| || || || Sbjct 210253 ACTGGTGAG-CTCATCCCTACCCAGGGTGAGATTTATCAGCACGAAAACATCCGTATTGC 210311 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||||| |||||||| ||| ||||| | Sbjct 210312 CTACATCAAGCAGCACGCTTTCGCTCACATCGATAACCACCTTGACTCAACTCCATCTGA 210371 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 210372 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACCATGGACCG 210422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027787165439729