Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2753 170 4e-37 seq2339 158 2e-33 seq2517 120 6e-22 seq2389 102 2e-16 seq3562 100 5e-16 >seq2753 Length=281039 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || ||| ||| || |||||||| || ||| Sbjct 118008 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 117949 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| ||| ||||| || ||| Sbjct 117948 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 117889 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 117888 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 117829 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || ||||||||||| |||||||| |||||||| Sbjct 117828 TCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 117782 >seq2339 Length=71557 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| ||||| || || || ||||| || || || || || ||||| Sbjct 18481 CCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 18540 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||||||||| || || |||| |||||||| || ||| Sbjct 18541 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGA 18600 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| ||||||||||| | ||| || ||||| || || | ||||| ||| Sbjct 18601 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 18660 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || || || | ||||||||||| |||||||| Sbjct 18661 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 Score = 150 bits (166), Expect = 3e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 || || |||||||| |||||| || || | || ||||| | |||||| ||||| || Sbjct 18289 TCCTTCTGGATGTTGTAATCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 18348 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || |||| ||| |||||||| || ||||| |||||||| |||||||| | ||||| Sbjct 18349 ATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTG 18408 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 ||||||||||| | ||||| ||||||||||| || || ||||| || | ||||||||| Sbjct 18409 TCGATGGTGTCAGAAGATTCCACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACA 18468 Query 68451 AATATCTGCAT 68461 || || ||||| Sbjct 18469 AAAATTTGCAT 18479 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || || || || || || || || |||||| Sbjct 18709 CCACCACGGAGGCGGAGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGAG 18768 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || | || || || || || || Sbjct 18769 AGAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGG 18828 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| | |||||| ||||||||||| | || || || Sbjct 18829 ATACCTTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACC 18888 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||||||||| ||||| || | |||||||| Sbjct 18889 TCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 18923 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || || ||||| || || || Sbjct 19013 CCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAA 19072 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || || Sbjct 19073 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGG 19132 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | |||||| || || ||||| | || || || Sbjct 19133 ATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGACGACTCGACC 19192 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || ||||||||||||||||| || ||||| Sbjct 19193 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 19239 >seq2517 Length=100120 Score = 120 bits (132), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || ||||| || || | || || || | |||||| || ||||| || Sbjct 66509 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 66450 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || |||||||| ||||||||||| || || | |||||| ||| Sbjct 66449 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 66390 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || ||||| || ||||||||||| Sbjct 66389 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 66331 >seq2389 Length=61879 Score = 102 bits (112), Expect = 2e-16 Identities = 417/643 (65%), Gaps = 17/643 (3%) Strand=Plus/Minus Query 30977 AGACAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGAC-AC 31035 ||| | |||||| |||||||||||| ||||||| || | | |||| | || | Sbjct 42677 AGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGGAT---ATTGGGGAT 42621 Query 31036 GTT--GGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCC 31093 ||| | ||||| || | |||||| || ||||||||||||| || ||||| || Sbjct 42620 GTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCCGACCAGAGACC 42561 Query 31094 ACGAGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGT 31153 | ||| ||| || | ||| || |||||| || |||| || ||||| | | Sbjct 42560 CATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGAC 42501 Query 31154 CCGGCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGC-CTCTACGGACCCGCAGA-TT 31211 ||||| ||| | || || ||| ||||| | ||| ||| | || |||| || Sbjct 42500 ACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAA-AGCACTCATTGTTACC-CAGAATT 42443 Query 31212 TGCGCGGTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACC---CTTC 31268 |||| |||||| ||||||||||| | ||| || ||| || | | ||| || | Sbjct 42442 TGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCC 42383 Query 31269 TTGACGCGCTCTTCGAGGGTCTTCCAGTCAAGGCGAGTTACC-GGCTCGGTTCCCCAGAG 31327 |||| |||| | || | | ||| || | | | | |||| | ||| | Sbjct 42382 TTGATCTGCTCCTTCAGATTGTCCCACTCCCA-CAACTCAGAAGGCTTGACATTCCACAT 42324 Query 31328 GTGATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGACCGTG 31387 || |||| | | ||| || |||||||| |||| ||||||| | ||| || || Sbjct 42323 GTCGAACTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTG 42264 Query 31388 CTCTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTC 31447 ||||| || || || |||||| || || || ||| || |||| ||||| | Sbjct 42263 CTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 42204 Query 31448 CCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACA-CGT 31506 | |||||| | |||| || ||| || || ||||||||||| ||||| | ||| Sbjct 42203 CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGT 42145 Query 31507 CCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCT 31566 | ||||||||| ||||| || || || || || | |||||||| || | |||| Sbjct 42144 CGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCT 42085 Query 31567 CGGGAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTT 31609 | ||| | ||| |||| |||||| |||||| |||||| Sbjct 42084 CCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTT 42042 >seq3562 Length=52523 Score = 100 bits (110), Expect = 5e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 |||||| ||||| |||| ||||||||| || ||| | || ||||| |||| | || | Sbjct 34292 GGCATATCGCCATTGGAGGTACTGGTTCGGAGTCTTCTCAAGGTGCATCTCCACGTGCTC 34233 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | ||| ||||| | ||| | ||||||| ||||||||||||| || | || | Sbjct 34232 CAGAGCGTGCTGCTTGATGTAACCGATGCGCAGGTTGGGATGCTTCTCGACTTTG-CCTG 34174 Query 225094 AGTCGGTTGTGC-CTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGG 225152 | || ||| || |||||||| | ||||||||| || | |||||||||||| |||| Sbjct 34173 TGGTGGGGATGCTTTCACCGGTGAGCAACTTGATGAGGGTGGACTTGCCCGCACCGTTGG 34114 Query 225153 GGCCAAT 225159 | ||||| Sbjct 34113 GCCCAAT 34107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921578980064680