Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2389 306 7e-78 seq3515 138 2e-27 >seq2389 Length=61879 Score = 306 bits (338), Expect = 7e-78 Identities = 1109/1712 (65%), Gaps = 55/1712 (3%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| |||||| | || |||| || | || |||||||||||| |||||| Sbjct 42871 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 42812 Query 243797 AGTCC--ACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 || || ||| |||| | | |||||| | || | ||| ||| || | | Sbjct 42811 AGACCCAACTT--CCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCAT----AG--TAG 42760 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 | || | | | ||| | ||||| |||||| |||||||| |||| | || | Sbjct 42759 GATCCTTCATGT---GAACG---TTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGAT 42706 Query 243915 CTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 | || ||||| ||| | | |||||| ||||| | | |||||||||| | || Sbjct 42705 CGGCCGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCT 42646 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 ||| || |||||| ||||||||| | || || || | | | |||| || Sbjct 42645 TGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGT 42586 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGACCAGGTGCCTG--- 244090 | |||| ||| ||| || |||| | || | || ||| || || ||| | Sbjct 42585 TCTTCATGGCATCCGACCAGAGACCCATATCGA-CGAGATCCTTGA---GGAGCCAGGGG 42530 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || || ||||| || || || | || || ||||||||||| | |||| || ||| Sbjct 42529 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 42470 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 || | || ||| |||| ||||| || |||| ||| || || |||||||| | | | Sbjct 42469 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGC 42410 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 |||| ||| | | |||||| || ||| | | || | || ||| |||||| Sbjct 42409 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 42350 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 | | || ||| |||| ||||||||| ||||| || | || | | Sbjct 42349 AACTCAGA-AGGC--------TTGACATTCCACATGTCGAACTGAAGAATACCTTCCGAG 42299 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTAC-AGCTCT 244388 |||| ||||| | |||| | |||||| || | || || |||||||| | || Sbjct 42298 GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTT-GCTCTTTGGCCAGCTCAAGAGAGGC 42240 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 ||| ||||| |||| ||||||||||||||||||| |||||| | || ||||||| | Sbjct 42239 TGTC-AGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGG 42181 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGA-CGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| |||| || | || ||| | ||||||| || ||||| || || | Sbjct 42180 GAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACA 42122 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 |||||||||| |||||| ||||| | || || | ||||||| |||| | Sbjct 42121 CCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACA 42062 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 || || | |||||||||||| ||| || || | ||| ||| ||| ||| ||| Sbjct 42061 TCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAG 42002 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 ||||| || | || | || || ||||| | || || | | Sbjct 42001 TCGTAGC----GGCCTTCT------TTGTAGTCG--ACAAAGGCAGGAAGAGCAAGAGAG 41954 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| || || ||||| || | | ||||| | ||||| ||||| ||| Sbjct 41953 GCCAAGTTGCACACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGG 41894 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || ||||| ||||||| || || ||| ||| ||||||||| |||||| Sbjct 41893 TTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTG 41834 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || ||||| ||||| || || || ||||| |||||| | || |||||| | | Sbjct 41833 TACAGCATAAAGGGGTTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCTTC 41774 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 || | ||| |||| | |||||| ||| || ||| || ||||| Sbjct 41773 TGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCA 41714 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCA 244986 ||||| ||| || || | |||||||||||| || ||| |||||||| |||| Sbjct 41713 AACTCCTCGCCATAGCAATCAGCCAGGCCGGGGCACT-CGTTGGGACACATGAGGGTCCA 41655 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 || ||| | | ||| | || ||||||||| || |||||||| || || ||||||| Sbjct 41654 ATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAG 41595 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 ||| | | | | || ||| ||| |||||| | || || | ||||||||| || Sbjct 41594 GTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACAC 41535 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 || ||||||| ||||| | |||| || | || || || ||||||||||| ||||| Sbjct 41534 ATCTGCGTGCCAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTG 41475 Query 245167 GTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 ||| || || | || | |||||||| || || | || | |||||||| || Sbjct 41474 GTCAACGTATCTGGC-AGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATG 41416 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTA 245285 |||||||||||| || || | ||| | | | || | | || | || ||| | Sbjct 41415 TGCCGTTGGTGCCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGA 41356 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCA 245345 || || || ||||||||| | ||| ||| |||||| ||||| || || || | Sbjct 41355 TACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAA 41296 Query 245346 TGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACG 245405 ||||||| |||||||| || || || || || |||||||| | |||| | | | Sbjct 41295 TGCTGTCGTCCTTCATGTCGACTAGGAAACAAGAAGACAGCTGACATTGGGGGGTACCGG 41236 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 |||||| || || || ||||||||| ||| Sbjct 41235 CGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG 41204 >seq3515 Length=139295 Score = 138 bits (152), Expect = 2e-27 Identities = 314/459 (68%), Gaps = 15/459 (3%) Strand=Plus/Plus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 |||| | || | |||| || || | || || ||||||||||||||| || ||||| Sbjct 84983 TTCGCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTT 85042 Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 ||||| || |||||||||||| || ||| | ||||||||| ||||||||||| ||||| Sbjct 85043 GCCTCGATTTTCTGGCTCAAGAAGCGTGGTCT-GATGCCCGGCCTCACCTTCTCCAACGA 85101 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 ||| ||| | | || ||||| |||| | |||||||| || || || |||| || Sbjct 85102 ACTTATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCG---CA 85158 Query 42872 CCTCAGGCA-CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 || | ||| | |||| | ||| | || || ||| ||||| || || || | | Sbjct 85159 TCTTAAGCACCGAGCCAGC-AAGCAAATAATCAAGGACATTATCACCGACGCTGTTGGCA 85217 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGAC 42989 | ||| | ||||| | || || | ||| |||||| | || | ||||||||| | Sbjct 85218 TTGAGCAAGAGTTTTTGACCGAGGCTCTG-CCGTGTGCTCTCCTAGGCATGAACGCCACA 85276 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTC 43046 || ||| |||| || || | | |||||||| | || || ||| | ||| | Sbjct 85277 CTGATGAAGCAA-TATATTGAATTTGTCGCCGATCGCCTATTGGTTGC--TCTTGGTAAC 85333 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | ||||| || | ||||||||| || ||||||||||| || |||| ||| Sbjct 85334 GAAAAGGTGTACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGC 85393 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| ||||| |||||||| || || | || || ||| Sbjct 85394 AAGACAAACTTCTTCGAGAAACGAGTTGGAGAATATCAG 85432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944294709819440