Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2339 122 2e-22 seq2753 96.9 8e-15 seq2517 84.2 5e-11 >seq2339 Length=71557 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| |||| || || || || || || ||||| | Sbjct 19013 CCACCTCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAA 19072 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || ||||| |||||||| |||||||| || | ||| Sbjct 19073 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGG 19132 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || |||||||| || |||| || || || || |||| || ||| || || Sbjct 19133 ATTCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGACGACTCGACC 19192 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| ||||| || ||||||||||| || ||||| Sbjct 19193 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 19239 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| ||||||| | || || || || || | || || || || ||| Sbjct 18517 TCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAG 18576 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || |||||||| | || || ||||| ||||| || || || | || || || Sbjct 18577 ATAAGTCGCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTA 18636 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| ||||| | || || ||||| || |||| |||||||||| Sbjct 18637 TCGATCGTATCCGAAGATTCGACTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACG 18696 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 18697 AAGATCTGCAT 18707 >seq2753 Length=281039 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || ||||| || |||||| || ||||| || || || | || || || Sbjct 117978 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 117919 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || || || || || ||| || || || || |||||||| || | Sbjct 117918 GCAAAGATAAGTCGTTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGAC 117862 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || ||||| || || | ||| || || || || || |||||||||||||| || || Sbjct 117861 TTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGG 117802 Query 288454 GTCTTGACGAATATCTGCAT 288473 || |||||||| |||||||| Sbjct 117801 GTTTTGACGAAAATCTGCAT 117782 >seq2517 Length=100120 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||||| || || || ||||| || | || || || ||||||||| Sbjct 66509 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 66450 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| || | || || || || || || |||||||| | || || || || Sbjct 66449 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 66390 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || || || || || ||||| ||||| || ||||||||||||||||| Sbjct 66389 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 66331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179597434120382