Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2389 316 2e-81 seq3515 109 7e-19 seq2938 96.9 4e-15 >seq2389 Length=61879 Score = 316 bits (350), Expect = 2e-81 Identities = 1145/1773 (65%), Gaps = 35/1773 (2%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 42867 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 42808 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 42807 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 42748 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 | ||| | ||||| || ||||| ||| || ||||| |||||||| | || | Sbjct 42747 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCCGCCATCTGGATAA 42688 Query 113745 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 113804 ||| | || ||||| || || ||||||| ||| || || | ||||||| Sbjct 42687 CATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATAT 42628 Query 113805 CCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTG 113861 ||| || || ||||| ||| || | | |||| | | |||||| | | | Sbjct 42627 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCCG 42571 Query 113862 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 113921 |||||||||| || | |||||||| | ||| ||||| || || |||| Sbjct 42570 ACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 42511 Query 113922 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 113981 | || | | || | | | || || |||| ||||||||||||||||||||||||||||| Sbjct 42510 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 42451 Query 113982 CCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 114041 ||| ||||| | ||||||||| ||||||||||| || | || | ||| || | || Sbjct 42450 CCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 42391 Query 114042 CCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 114099 | | ||| | || | ||||| || |||||| || | | || | || | Sbjct 42390 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 42333 Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 | |||||| || ||||| || ||||||| ||||| || || |||| || || ||| Sbjct 42332 ATTCCACATGTCGAACTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 42273 Query 114160 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCT 114218 ||||| | | | |||| || || | || ||||| ||||| || || |||| Sbjct 42272 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCT 42214 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 114277 | || || | || | | ||||||| || || || | | || || | | Sbjct 42213 CGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 42155 Query 114278 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 114337 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 42154 AGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 42095 Query 114338 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 114397 || ||||| ||| | ||| ||| || ||| || | | | || || || | | Sbjct 42094 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACG 42035 Query 114398 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 114456 || || | |||| || || ||||| | | | || | | || ||| | | | ||| Sbjct 42034 ACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 41976 Query 114457 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 114516 | | |||||| || | || |||| || ||||||| |||||| || ||| Sbjct 41975 AAAGGCAGGAAGAGCAAGAGAGGCCAAGTTGCACACAGCAACCTCATCAGGGGCACAGTA 41916 Query 114517 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 114576 ||| || || ||||| |||| || || || |||||| |||| |||||| || || Sbjct 41915 CTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCT 41856 Query 114577 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 114636 |||| |||| || ||||||||||| ||||| | || | ||||| || || ||||||| Sbjct 41855 CTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCTGTCTGGGACTC 41796 Query 114637 GAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCT 114695 ||| || | | ||||| | || | ||| | | ||| | | | || ||||| || Sbjct 41795 GAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 41737 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755 | ||||| |||||| || |||||||| || || | || | || || || || Sbjct 41736 CATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCGGGGCACT 41677 Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815 | || || | ||| | ||| | || || || || |||||||||||||| |||| Sbjct 41676 CGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTG 41617 Query 114816 GGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 114875 ||||||| ||||| |||||| || ||| || |||||| | || || || | Sbjct 41616 GGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTC 41557 Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935 |||| || | |||||| | | ||| |||||||| || || || || | || | || | Sbjct 41556 GCAAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTCGAGATAGATGGCAAATGCAC 41497 Query 114936 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989 | | | || || |||||| || || || || ||| || || || |||| Sbjct 41496 C---AGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAA 41440 Query 114990 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTC 115049 |||| |||||||| || | ||| ||| || || || |||| ||| | || | Sbjct 41439 GCATGGGAATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATATAAGAGCCGGTAGCAC 41380 Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109 || |||| || || || ||||| || ||| ||| ||||| || || | Sbjct 41379 GGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCT 41320 Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCG 115169 ||||| || ||||||| ||||| || ||| |||| | ||| ||||| || | Sbjct 41319 TGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAAGAAG 41260 Query 115170 ACATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACAT 115227 ||| || | || || ||||| ||||||||||| || |||| |||||| ||| | Sbjct 41259 ACA--GCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AG 41204 Query 115228 ACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATA 115285 | |||| |||||| | |||||| ||||| ||| ||||| || || |||| Sbjct 41203 AGCTTGCTGGACATGAGGTGGTAGGTTTCCAAAACGCGCTCAATGTTGTCTCCCCAAATA 41144 Query 115286 CCGATCGAGACCCGCATAAACATGTATTGGGGT 115318 |||| || || ||||||| ||||| || ||| Sbjct 41143 CCGACCGCAACGCGCATAATCATGTGCTGAGGT 41111 >seq3515 Length=139295 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 85140 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTGGAGAAGGTGAGGCCG 85081 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | ||||||||||| ||| | ||| ||||||||| Sbjct 85080 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATG 85021 Query 126167 CCCTCCACACACGCGAACGC 126186 ||||||||| ||||| || Sbjct 85020 CCCTCCACAGCAGCGAAAGC 85001 >seq2938 Length=379567 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTCACGGGCAA 11015 ||| | ||| || | ||| |||||||||| ||| | || ||| ||| |||| Sbjct 319947 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAGGGCGACTTGGCTTT----GGCAG 320002 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 | ||||| |||||||||| ||||||||| ||||| ||||| ||||| | || || Sbjct 320003 CACTAAAGAGCTCTCGGACTCGCTTGGCACCCACACCGACAAAGATTTCGTCGAA-TTCA 320061 Query 11076 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 11134 | | | |||| | || |||||| ||| | |||||| || | |||||| || || || Sbjct 320062 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 320121 Query 11135 GTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 11190 ||||||||||| || || ||| | ||||| |||| | |||| | | ||||||| Sbjct 320122 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACC 320177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597325457178520