Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2339 114 1e-20 seq2517 95.1 1e-14 >seq2339 Length=71557 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | |||||| ||||| | || ||| || || ||||||||||| Sbjct 18252 ACCACCACGCAGACGAAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAATCGCT 18311 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| |||||||| |||||| |||| || || |||||||||||||| Sbjct 18312 CAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 18371 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || || ||| || | || ||| | ||||| Sbjct 18372 GATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTGTCGATGGTGTCAGAAGATTCCAC 18431 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||| || ||||| || || || ||||||||||| Sbjct 18432 TTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCAT 18479 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || ||||||||||| || | | |||||| | || Sbjct 19028 AGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCC 19087 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || || | || || ||||||||||| || || ||||| || || || Sbjct 19088 TCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATCC 19147 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || ||| | || || || | ||| | |||| Sbjct 19148 TGAATCTTCGACTTGACATTGTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTC 19207 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || ||||| |||||||| Sbjct 19208 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 19239 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||| || ||||| ||||| || | || || || | ||| Sbjct 18724 AGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCT 18783 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | |||||||| || ||||| || ||||| || || Sbjct 18784 TCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCC 18843 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || || || || || | || | |||| Sbjct 18844 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 18903 Query 64412 TTGCCGGTCAAAGTTTTTAC 64431 || ||||||||||| || || Sbjct 18904 TTTCCGGTCAAAGTCTTGAC 18923 >seq2517 Length=100120 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || | | ||| || |||| |||||||||||||| || | || Sbjct 66509 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 66450 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | ||||||||||| || ||||| || || || ||||| ||||| ||| ||| || Sbjct 66449 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 66390 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || || || || | || | ||||||||| |||| ||| || |||||| Sbjct 66389 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 66330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499621260484360