Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2389 262 4e-65 >seq2389 Length=61879 Score = 262 bits (290), Expect = 4e-65 Identities = 1104/1721 (64%), Gaps = 64/1721 (4%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| |||||| |||||||||| || || || ||||| | | |||| | | | Sbjct 41046 TACTTTGGCTTCAAGACTCTGGAGAGATCATATCTTCTCAAACTCAACGGCAAGATCGTC 41105 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 |||||||| || || || | |||||||| || |||| ||| || || |||| | Sbjct 41106 GAGCGACCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAG 41165 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 |||||| | | | |||| |||| | ||| ||| | || || Sbjct 41166 CGCGTTTTGGAAACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACA 41225 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCA----CAGATGTCTTCGTGTTTCCTGAT-GACGA 93958 || |||||||| || ||||| ||| ||| ||||||| |||||||| | ||| | Sbjct 41226 CTCTTCAACGCCGGTACCCC----CCAATGTCAGCTGTCTTCTTGTTTCCTAGTCGAC-A 41280 Query 93959 ACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAA 94018 |||| |||| ||| ||| || | ||||| |||||| |||||| | ||||| | Sbjct 41281 TGAAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCA 41340 Query 94019 AATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCC 94078 | || || || ||||| | | |||||| | | ||||| | || || || || Sbjct 41341 AGATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTATATTG 41400 Query 94079 GCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGG 94138 ||| ||||| ||||| ||||||||| || | || ||||| || |||||||||||| | | Sbjct 41401 CCGGCACCAACGGCACATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTG 41460 Query 94139 CGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGC 94198 | | ||||| |||||||| || | | | ||| | || || |||||||||||| Sbjct 41461 CCAGATACGTTGACCAGGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTATCTCGAGC 41520 Query 94199 CCTGGCACGCGGACGTG-CAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 | |||||||| || ||| | ||||| | || ||||||||||||||||||| || Sbjct 41521 CTTGGCACGCAGATGTGTTTGACTTTC-TTGATTTGCGAAAGAACCACGGCAAGGAAGAA 41579 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | ||||||||| ||||| ||| | ||||| || || ||||| |||||| Sbjct 41580 AACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTC 41639 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 || || ||| | |||| || | |||||||| || || ||||| ||| | || | Sbjct 41640 GAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGA---T 41696 Query 94378 TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA--------ATCG-CAGGGCAAG 94428 || || || || || || | |||| ||||| | || ||||| Sbjct 41697 TG-CTATGGC-----GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGT 41750 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | | ||| ||| ||| |||||| ||| | ||| | || ||| || Sbjct 41751 GGCCGCAAGACTATTCGTGCCCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACAGAA 41810 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 ||||| | |||| || ||| |||||| | |||| ||| ||||||| || || Sbjct 41811 ACGGGCAACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAAC 41870 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || || ||||| || |||||||| ||||| | ||||| | | || || Sbjct 41871 CTGGGAACCATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGAT 41930 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| |||||||||| ||| ||| ||| | || | | || || ||| |||| Sbjct 41931 GAGGTTGCTGTGTGCAACTTGGCCTCTCTTGCTCTTCCTGCCTTTGT-CGA-----CTAC 41984 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTG 94728 | | || | | ||| | || |||| | || | | | | ||| Sbjct 41985 A--AAGAAGGCCGC-TACGACTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGT 42041 Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||| |||| | | || || ||| |||||| | |||||| ||| ||| Sbjct 42042 AACCTCAACAAGATCATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAAC 42101 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || ||||| |||||||| | || || |||||| | || ||||| | | || Sbjct 42102 ATGCGACATCGACCCATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG 42161 Query 94849 CGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATT 94908 || |||||| ||| ||| ||| || | | || | | || ||||| | ||| Sbjct 42162 CGCATGCCCTTCGAGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATC 42221 Query 94909 TATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAA 94968 || ||| ||| ||| | || | | |||||| | | | ||| || || Sbjct 42222 TACCACGCTGCCCTGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGC---CCCTACTCT 42278 Query 94969 TCGTTCCGCGGATCGC---CCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTG 95025 | ||| || || | ||| |||| || ||| ||||||||||| | ||| ||| Sbjct 42279 ACCTTCAAGGGCTCTCCCGCCTCGGAA---GGTATTCTTCAGTTCGACATGTGGAATGTC 42335 Query 95026 AAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTG 95083 ||||| || | ||| || |||| || || | | || || | | | |||||| Sbjct 42336 AAGCCTTCTGAGTTGTGGGAGTGGGACAATCTGAAGGAGCAGA--TCAAGGAGCACGGTA 42393 Query 95084 TGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCA 95143 | ||| || |||| | || ||||||||||| |||||||| |||| || || || | Sbjct 42394 TTCGCAACTCGTTGCTGCTCGCTCCCATGCCCACCGCCTCCACCTCGCAAATTCTGGGTA 42453 Query 95144 ACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGG 95203 |||| |||| || || || | ||| |||||| | ||| | | || || | || || | Sbjct 42454 ACAATGAGTGCTTTGAGCCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTG 42513 Query 95204 AATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTC--TCTGGGTGT---GTG 95258 |||||| ||| ||||| ||||| ||| || |||| | ||||| | || Sbjct 42514 AATTCCAGGTCGTCAACCCCTGGCTCCTCAAGGATCT--CGTCGATATGGGTCTCTGGTC 42571 Query 95259 GGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCA 95318 || || || | ||||||| | | || ||||| ||| | ||||||||||| | Sbjct 42572 GGATGCCA---TGAAGAACCGCATCATTGCCGAGAACGGTTCCATTCAGAACATCCCCAA 42628 Query 95319 AATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG-CGTGA 95377 || || | ||||||||||| |||||||||||||| |||||||| | ||||| | || Sbjct 42629 TATCCCCGCCGACATCAAGGCTCTCTACAAGACCGTTTGGGAGATTTCTCAGCGTCATGT 42688 Query 95378 TACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 || || | ||||||| ||||| |||| ||| |||| Sbjct 42689 TA-TCCAGATGGCGGCCGATCGCGGTGCCTTTATCGACCAG 42728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494699892353240