Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2389 208 8e-49 seq2753 113 4e-20 seq2339 102 8e-17 >seq2389 Length=61879 Score = 208 bits (230), Expect = 8e-49 Identities = 927/1446 (64%), Gaps = 33/1446 (2%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || || || || ||||| || || | | || | ||| ||| | | Sbjct 42531 GGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATG 42472 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | || || || || || ||||| | |||| ||||| |||||| || | Sbjct 42471 GCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGA 42412 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || ||| || || || | |||||| | || | ||||||| | ||| |||| Sbjct 42411 GCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCC 42352 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT--CGACTGGCGGG 153265 ||| | | || || | | |||||||||||| |||| | | ||| ||| |||||| Sbjct 42351 ACAACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAATACCTTCCGA--GGCGGG 42294 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCG-A 153324 | ||| || ||| |||| ||| | || |||||| || || || || | Sbjct 42293 AGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCA 42235 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGA--ACGGCCGCTTCTTCGCT 153382 | || | | ||| ||||| ||| ||| || || ||||| |||| || || Sbjct 42234 GGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGG--GCCTCGGGAGA 42177 Query 153383 CTCGTACGGCATGCGCAGCAGCAC-AAAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 |||| | ||||||||||| |||| ||| |||||||| |||||||| | ||| || |||| Sbjct 42176 CTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGA 42118 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 |||||||||| | ||||||| | || | | ||||| || || ||| ||| | Sbjct 42117 TGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 42058 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | || ||||||||||| || || ||||||| ||| | | | | || |||| ||| || | Sbjct 42057 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGT 41998 Query 153562 AG-GTCAT--TTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAG 153617 || | | | || || | || | | ||| || | |||| ||| |||| || || Sbjct 41997 AGCGGCCTTCTTTGTAGTCGACAAAGGCA-GGA---AGAGCAAGAGAGGCCAAGTTGCAC 41942 Query 153618 ACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTT 153677 || || ||| || | | | | ||||| | |||||| | ||| |||||| || Sbjct 41941 ACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGA 41882 Query 153678 ATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTAC 153737 ||| |||| || | ||| ||||| || | ||||| || || ||| | ||||| | Sbjct 41881 ATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAG 41822 Query 153738 GGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACC 153797 || ||| || || || | |||| ||| | || | ||| || || | Sbjct 41821 GGGTTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATA 41762 Query 153798 CGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCG 153857 || || |||||||| | ||| || |||||| || ||||||||| ||||| Sbjct 41761 GTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCA 41702 Query 153858 TAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCG 153917 ||||| || || |||||||| |||| | |||||||| || | ||| ||| || Sbjct 41701 TAGCAATCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCA---ATCCCCGTTC 41645 Query 153918 TT---GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCC 153974 || |||||| |||||| ||||| || | ||| || || | ||||||||| || Sbjct 41644 TTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCA 41585 Query 153975 TTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGC 154034 | || ||| ||| ||| | || || || | | | | | || |||||| Sbjct 41584 CGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACATCTGCGTGC 41525 Query 154035 CAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGG 154091 || || || | |||| ||| | ||||| ||| || |||||||| || |||| Sbjct 41524 CAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTAT 41465 Query 154092 CGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTC 154151 | | | ||||||||||| || | |||||| | |||| | | ||||||||||| Sbjct 41464 CTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCCGTTGGTG 41405 Query 154152 GAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GCC 154210 || | |||| || || | | || ||||| | ||| || || || ||| Sbjct 41404 CCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCC 41345 Query 154211 GTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTC 154270 | ||| || || || ||| || || |||||| ||||| ||||| ||||| Sbjct 41344 AT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTC 41286 Query 154271 GCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCG-AAAAGA 154329 | | ||| | |||||| ||| ||| || | || | | | ||| || |||| Sbjct 41285 CTTCATGTCGACTAGGAAACAAGAAGACAGCTG-ACATTGGGGGGTACCGGCGTTGAAGA 41227 Query 154330 GGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGT 154389 | || || ||||| || || || || | ||| | | |||| ||||| | || Sbjct 41226 GTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTAGGTTTCCAAAACGC 41167 Query 154390 CTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTT 154449 || || | || || ||| |||| ||| |||||||| | ||||||||| || || | Sbjct 41166 GCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCT 41107 Query 154450 CGGCGA 154455 || ||| Sbjct 41106 CGACGA 41101 >seq2753 Length=281039 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||||| || ||||| | | | Sbjct 117973 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 117914 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || || || |||||||| || || || || ||||| ||| || || | | Sbjct 117913 GATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 117854 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||||||||| | || | ||| || || || || ||||| || Sbjct 117853 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGAC 117794 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 117793 GAAAATCTGCAT 117782 >seq2339 Length=71557 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| || ||||| | | |||||||| ||||| ||||||||| | Sbjct 18481 CCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 18540 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||| || || |||| | |||| || ||||||||||| || || Sbjct 18541 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGA 18600 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | |||| | || | || || | || || || Sbjct 18601 ATGCCTTCCTTATC-TTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGAC 18659 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||| || || || |||||||| Sbjct 18660 TTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| |||||||||||||| | || || ||||| || || || || | Sbjct 19044 TTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGCTGCTTTCCAG 19103 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTT 138536 ||||||||||||| ||||| || || || || || || || ||| | || | || Sbjct 19104 CGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATC-CTGAATCTTCGACTTG 19162 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | ||||| | |||||| ||||||| || | || || || || || || Sbjct 19163 ACATTG-TCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGT 19221 Query 138597 TTTTACAAAAATCTGCATGGCT 138618 || || || || ||||||||| Sbjct 19222 CTTGACGAAGATTTGCATGGCT 19243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496239019837680