Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2753 125 7e-24 seq2517 116 4e-21 seq2339 116 4e-21 seq3515 114 1e-20 seq2389 102 8e-17 >seq2753 Length=281039 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||| || || || ||||| |||| | Sbjct 118008 CCACCACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 117949 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||| ||||| || || || Sbjct 117948 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGA 117889 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| ||||| ||| |||||| | | ||| || Sbjct 117888 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTCCAC 117830 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||| || || || || ||||| || ||||||||||| Sbjct 117829 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 117782 >seq2517 Length=100120 Score = 116 bits (128), Expect = 4e-21 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || || ||| || || ||||| || |||||| ||||| Sbjct 66509 TTCTGAATGTTGTAGTCGGACAGGGTTCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATC 66450 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || |||||||||||||| |||||| ||||| | ||| Sbjct 66449 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTCG 66390 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| |||||| || | ||| | || ||||| |||||||| || || ||| Sbjct 66389 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAAA 66330 Query 127106 ATCTGCATGGCTTATT 127121 ||| |||| |||| Sbjct 66329 --CTGGATGGTGTATT 66316 >seq2339 Length=71557 Score = 116 bits (128), Expect = 4e-21 Identities = 138/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || ||||||||||| ||| | || || ||| || ||||| || ||| Sbjct 18739 GTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCTTCCAGCTGCTTGCCA 18798 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||||||||||||||| ||||| || || ||||||||| || ||| |||| Sbjct 18799 GCGAAGATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTCGACTTG 18858 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| || | ||| | || || ||||||| ||| Sbjct 18859 ACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTC 18918 Query 127097 TTTACAA 127103 || |||| Sbjct 18919 TTGACAA 18925 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 || || || || |||||||||| || |||||| || || ||||| ||||| || | Sbjct 18289 TCCTTCTGGATGTTGTAATCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 18348 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 || | ||| ||||| |||||||| ||||||||||||||| || || |||| | Sbjct 18349 ATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTG 18408 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 |||| |||||| | | || ||||| | ||| | || || || |||| || || ||| Sbjct 18409 TCGATGGTGTCAGAAGATTCCACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACA 18468 Query 127103 AAAATCTGCAT 127113 ||||| ||||| Sbjct 18469 AAAATTTGCAT 18479 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||||| | |||||||| || ||||||||||| ||| | Sbjct 18481 CCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 18540 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || || |||| | |||||| || || || || Sbjct 18541 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGA 18600 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || || || ||| | | |||| || |||| | |||||| Sbjct 18601 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 18660 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| |||| ||| || || || |||||||| Sbjct 18661 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 >seq3515 Length=139295 Score = 114 bits (126), Expect = 1e-20 Identities = 299/452 (66%), Gaps = 13/452 (3%) Strand=Plus/Plus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCG 47192 ||| | || ||| | |||||||| || |||||| |||||||| || |||||| Sbjct 84986 GCCCAGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCC 85045 Query 47193 GCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTA 47252 |||| || | | || | || | |||||||||||||| || |||||| || Sbjct 85046 TCGATTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCCAACGAACTT 85105 Query 47253 ATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCT---ACTA-CAACACTAG 47308 ||||| | || || || ||||||| ||||||| ||||| | ||| || | || Sbjct 85106 ATCTCCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAG 85165 Query 47309 AGTCGATCAAAAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCAT 47368 ||| | | | || | ||| ||||| | |||| || || | ||| Sbjct 85166 CACCGAGCCAG-------CAAGCAAATAATCAAGGACATTATCACCGACGCTGTTGGCAT 85218 Query 47369 TGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGAT 47428 |||| |||||||| ||||||||||||| || | | || |||||||| | Sbjct 85219 TGAGCAAGAGTTTTTGACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACT 85278 Query 47429 GATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATC-CCA 47487 ||||| | || || |||||||||||||| ||||| | ||| || ||| | | Sbjct 85279 GATGAAGCAATATATTGAATTTGTCGCCGATCGCCTATTGGTTGCTCT-TGGTAACGAAA 85337 Query 47488 AGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGA 47547 || | ||| | |||| || || ||||| || ||| | |||||||| | | ||||||| Sbjct 85338 AGGTGTACAAAACCGCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGA 85397 Query 47548 CCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 | ||||| |||||||| || || || |||||| Sbjct 85398 CAAACTTCTTCGAGAAACGAGTTGGAGAATAT 85429 >seq2389 Length=61879 Score = 102 bits (112), Expect = 8e-17 Identities = 350/532 (66%), Gaps = 13/532 (2%) Strand=Plus/Minus Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097 || ||||| |||||| ||| | ||||||| ||||| || || || || | || || Sbjct 42556 TCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGG 42497 Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157 | | | || | |||| ||| | ||||| || |||| |||||||| || || |||| Sbjct 42496 CGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAG 42437 Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAAT 146216 || | ||||| |||||| || | |||||| ||||| | | ||||| || |||| | Sbjct 42436 GTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGA-T 42378 Query 146217 CTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTC 146276 || ||| || ||| ||| | |||||| | | | || | || ||| | |||| Sbjct 42377 CTGCTCCTTCAGATTGTCCCACTCCCACAACTCA---GAAGGCTTGACATTCCACATGTC 42321 Query 146277 GTAATGCATAGTGCCG-CGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGA 146335 | | || | | | || | || ||| | || | | | || || || | | Sbjct 42320 GAACTGAAGAATACCTTCCGAGGCGGGAGAGCC-CTTGAAGGTAGAGTAGGGGCCTT-GC 42263 Query 146336 TCTT-GGCCAGTTCGCAGCTAG-CTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCAT 146393 |||| |||||| || || || || ||| || | ||| |||||||| |||| Sbjct 42262 TCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 42204 Query 146394 GTAGTTGACGCTC-CTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCGT 146452 | ||||| |||| | |||||| ||| |||| || ||| | ||| |||| Sbjct 42203 CTTGTTGA-GCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAGAGCAAGAAAAGCGT 42145 Query 146453 CGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGC 146512 |||| |||||||| | || ||||| | ||| || ||| | |||| ||||| ||| Sbjct 42144 CGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCT 42085 Query 146513 CCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGAC 146564 || || |||| || |||||| || |||||||||||||| ||||| ||||| Sbjct 42084 CCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACGAC 42033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478397968560