Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2389 309 4e-79 seq3515 113 6e-20 seq2938 91.5 2e-13 >seq2389 Length=61879 Score = 309 bits (342), Expect = 4e-79 Identities = 1147/1772 (65%), Gaps = 33/1772 (2%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| |||||| || |||| | || | ||||||||| ||||||||||| | Sbjct 42867 TGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGAC 42808 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||||| || | ||||| |||| | |||| | || ||| | |||| Sbjct 42807 CCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGT 42748 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | ||| | ||||| || ||||| ||| || ||||| |||||||| | || | Sbjct 42747 GAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCCGCCATCTGGATAA 42688 Query 115706 CATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATAT 115765 ||| | || ||||| || || ||||||| ||| || || | ||||||| Sbjct 42687 CATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATAT 42628 Query 115766 CCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTG 115822 ||| || || || || ||| || | | |||| | | |||||| | | | Sbjct 42627 TGGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCCG 42571 Query 115823 ACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCAC 115882 |||||||||| || | |||||||| | ||| ||||| || || |||| Sbjct 42570 ACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCAC 42511 Query 115883 CCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 | || | | || | | | || ||||||| ||||||||||||||||||||||||||||| Sbjct 42510 CAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTAC 42451 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 ||| ||||| | |||||||| ||||||||||| || | || | |||||| | || Sbjct 42450 CCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATAC 42391 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGT--TGAGCTTTGTCTCCCC 116060 | | || | || | ||||| || |||||| || | | || | || | Sbjct 42390 CGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAA--GGCTTGAC 42333 Query 116061 CTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120 | |||||| || ||||| || ||||||| || || || || |||| || || || Sbjct 42332 ATTCCACATGTCGAACTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGAGTA 42273 Query 116121 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG-AGGGCTGCGTGATACATTGTCT 116179 ||||| | | | |||| || || | || ||||| ||||| || || |||| Sbjct 42272 GGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAGGGCAGCGTGGTAGATGGTCT 42214 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-A 116238 | || || | || | | ||||||| || || || | | || || | | Sbjct 42213 CGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCG-CAGAGCA 42155 Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 | ||| | || || ||||| || ||||| | || || || ||||||| ||| || Sbjct 42154 AGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTTGCTG 42095 Query 116299 TTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 116358 || ||||| ||| | ||| ||| || ||| || | | | || || || | | Sbjct 42094 TTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACG 42035 Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT-GAC 116417 || || | |||| || || ||||| | | | || | | || ||| | | | ||| Sbjct 42034 ACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCGGCCT-TCTTTGTAGTCGAC 41976 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | | |||||| || | || |||| || ||||||| |||||| || ||| Sbjct 41975 AAAGGCAGGAAGAGCAAGAGAGGCCAAGTTGCACACAGCAACCTCATCAGGGGCACAGTA 41916 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 ||| || || ||||| |||| || || || |||||| |||| |||||| || || Sbjct 41915 CTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCT 41856 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTT 116597 |||| |||| || ||||||||||| |||||| | || | ||||| || || ||||||| Sbjct 41855 CTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCTGTCTGGGACTC 41796 Query 116598 GAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCT 116656 ||| || | | ||| | | || | ||| | | ||| | | | || ||||| || Sbjct 41795 GAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT 41737 Query 116657 CGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCC 116715 | ||||| |||||| ||||||||||| || ||| ||| || | || || || | Sbjct 41736 CATACTTCTCGTAGAGAGCCTCAAACTCCTC-GCCATAGCAATCAGCCAGGCCGGGGCAC 41678 Query 116716 TTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 116775 | | ||||| | ||| | ||| | || || || || |||||||||||||| ||| Sbjct 41677 TCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCT 41618 Query 116776 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 116835 |||||||| || || |||||| || ||| || |||||| | || || || Sbjct 41617 GGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTT 41558 Query 116836 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-A 116894 ||||| || | |||||| | | ||| |||||||| || || || || | || | || | Sbjct 41557 CGCAAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTCGAGATAGATGGCAAATGCA 41498 Query 116895 CC-CCTTGC--GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAG 116951 || | || | | || |||||| || || || || || ||| || || ||||| Sbjct 41497 CCAGGTCGCTTGTTG-CCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAAG 41439 Query 116952 CATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCT 117011 ||| |||||||| || | ||| ||| || || || |||| ||| | | || | Sbjct 41438 CATGGGAATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATATAAGAGCCGGTAGCACG 41379 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071 || ||||| || || || ||||| || ||| ||| ||||| || || | | Sbjct 41378 GATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTT 41319 Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 117131 |||| || ||||||| || || || ||| |||| | ||| ||||| || || Sbjct 41318 GAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAAGAAGA 41259 Query 117132 CATTTGTGGCCTT--GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 117189 || || | || || ||||| ||||||||||| || |||| |||||| ||| | | Sbjct 41258 CA--GCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA--AGA 41203 Query 117190 CCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATAC 117247 |||| |||||| | |||||| ||||| || ||||| || || ||||| Sbjct 41202 GCTTGCTGGACATGAGGTGGTAGGTTTCCAAAACGCGCTCAATGTTGTCTCCCCAAATAC 41143 Query 117248 CGATTGAGACCCGCATAAACATGTATTGGGGT 117279 ||| | || ||||||| ||||| || ||| Sbjct 41142 CGACCGCAACGCGCATAATCATGTGCTGAGGT 41111 >seq3515 Length=139295 Score = 113 bits (124), Expect = 6e-20 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| ||| | |||||| ||||||||||| ||||| || |||||| || || Sbjct 85140 GCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTGGAGAAGGTGAGGCCG 85081 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||| |||||||| | ||||||||||| ||| | || ||||||||| Sbjct 85080 GGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATG 85021 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA--CTTTGT-ATCA 127696 ||||||||| ||||| || | | |||| ||| | ||| ||| | |||| | | Sbjct 85020 CCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGC---GAAGCTGGAATCCTTGTCCTGA 84964 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGAC 127740 | ||| || ||||| | ||| |||||| ||| || ||||| Sbjct 84963 ATCCAACGAATGGCCCAGTCTGCTTTTTTCCGGATGCAGGGGAC 84920 >seq2938 Length=379567 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/237 (70%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACGGGCAA 12930 ||| | ||| || | |||||| ||||||| ||| | || ||| ||| |||| Sbjct 319947 ACCAATGGCATCCAGTTCGTCGATGAAAATGATGGAGGGCGACTTGGCTTT----GGCAG 320002 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | ||||| ||||| |||| ||||||||| ||||| ||||| || || | || || Sbjct 320003 CACTAAAGAGCTCTCGGACTCGCTTGGCACCCACACCGACAAAGATTTCGTCGAA-TTCA 320061 Query 12991 CGGCGGAACAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 13049 | | | |||| | || |||||| ||| | |||||| || | |||||| || || || Sbjct 320062 CTACCGGACATGTAGAAGAAGGGCACGCCAGCTTCACCGGCCACGGCTCGCGCAAGTAGA 320121 Query 13050 GTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGG-ATCCTGGCACC 13105 ||||||||||| ||||| ||| | ||||| |||| | |||| | | ||||||| Sbjct 320122 GTCTTCCCCGTTCCTGGAGGCCCAACCAGAAGAACACC-CTTGGGCAACTTGGCACC 320177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613478296142040