Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2389 141 1e-28 >seq2389 Length=61879 Score = 141 bits (156), Expect = 1e-28 Identities = 445/676 (66%), Gaps = 10/676 (1%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATGCCGG 203900 || || |||||||| |||| || || | |||| ||||| | | || ||||||||||| | Sbjct 42874 TCTACGGTGAACTGGATGG-GTGCAGCAGCAG-CCTGCGTGCGCAAGTAGTACATGCCCG 42817 Query 203901 TCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGT 203960 |||| || ||| || ||| || | |||||| || | | |||| || | || | Sbjct 42816 TCTTGAGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGAT 42757 Query 203961 CGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCC 204019 | |||||||| ||| || |||||| |||||||| |||||| || ||||| || ||| Sbjct 42756 CCTTCATGTGAACGTTGAGCGACTGGGACTGGTCGAT-AAAGGCACCGCGATCGGCCGCC 42698 Query 204020 ATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGT 204079 || | ||||| ||| ||||||||||| || |||||| | | | || ||| Sbjct 42697 ATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCG 42638 Query 204080 TGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGT 204138 || | || | | || |||| | || ||||| ||||| || | | || || | Sbjct 42637 GCGGGGATAT-TGGGGATGTTCTGAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCAT 42579 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 | ||| ||| | |||| || || ||| | || |||||||| || ||| Sbjct 42578 GGCATCCGACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTG 42519 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || || || | || || | || | | | |||| ||| |||| || || ||| Sbjct 42518 GAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTC 42459 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 ||||| || | ||| || | |||| ||| |||||||||||||| || |||| ||||| Sbjct 42458 ATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTT 42399 Query 204319 GCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATCGCACTGG 204377 ||| | ||||| | | || |||| ||||||| | ||| || || | || | Sbjct 42398 GCGAATACCGTGCTCCTTGA-TCTGCTCCTTCAGATTGTCCCACTCCCACAACTCAGAAG 42340 Query 204378 GTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACG 204437 | || || ||||||||||||||||| || |||| | | || ||||||| | | Sbjct 42339 GCTTGACATTCCACATGTCGAACTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGG 42280 Query 204438 TCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACA 204497 | | || || | ||||| ||||||| ||||| | || ||| | ||| | Sbjct 42279 TAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGCTGTCAGGGCAGCGTGGTAGA 42220 Query 204498 TGGTCTCAAAGATCTG 204513 ||||||| |||||||| Sbjct 42219 TGGTCTCGAAGATCTG 42204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795117738250640