Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2339 116 9e-21 seq2753 114 3e-20 >seq2339 Length=71557 Score = 116 bits (128), Expect = 9e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| ||||| || ||||| || | |||||||| | | ||| | |||||| Sbjct 18724 AGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCT 18783 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || |||||||| | |||||||| || ||| || ||||| ||| Sbjct 18784 TCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCC 18843 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 18844 TGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 18903 Query 199598 TTACCCGTGAGAGTTTTCACAA 199619 || || || | ||| || |||| Sbjct 18904 TTTCCGGTCAAAGTCTTGACAA 18925 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || ||||| || || |||||||| || | ||||||||||| | || Sbjct 19018 TCGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGT 19077 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || ||||||||||| |||||||| |||||||||||||| || ||||| Sbjct 19078 GCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCC 19137 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| ||| || || | ||||| | | || || || | Sbjct 19138 CTCCTTATCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGACGACTCGACCTCGAG 19197 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || || ||||| Sbjct 19198 AGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 19236 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| |||||| || || || | || |||||||||||||||||||| || Sbjct 18289 TCCTTCTGGATGTTGTAATCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAA 18348 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || || || |||||||| ||| || || || ||||||||||| || || Sbjct 18349 ATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTGACATTG 18408 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| |||||| | | ||| || ||||| || || ||||| || || | || || ||| Sbjct 18409 TCGATGGTGTCAGAAGATTCCACTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACA 18468 Query 199619 AAAATTTG 199626 |||||||| Sbjct 18469 AAAATTTG 18476 >seq2753 Length=281039 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| || || |||||| |||| ||||||||| || || Sbjct 118002 CGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 117943 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || ||||| || || ||||||||||| ||| || Sbjct 117942 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCC 117883 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 117882 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 117823 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| |||||||| ||||| || ||||| || Sbjct 117822 GTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTG 117785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178864669507523