Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3515 170 2e-37 seq2753 134 1e-26 seq2517 105 7e-18 seq2339 91.5 1e-13 >seq3515 Length=139295 Score = 170 bits (188), Expect = 2e-37 Identities = 354/518 (68%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| |||||| || |||||||| || || |||||| || || || || || || | Sbjct 85447 CATAACGCCAGCCTTCTGATATTCTCCAACTCGTTTCTCGAAGAAGTTTGTCTTGCCACC 85388 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 |||||||||| | ||| ||||| ||||||||||| || ||||| ||| || | Sbjct 85387 CAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTACACCTTTTCGTTACC 85328 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCA 132767 | || | || | || | ||||| || || || || |||||| ||| || | || Sbjct 85327 AAGAG--CAACCAATAGGCGATCGGCGACAAATTCAATATATTGCTTCATCAGTGTGGCG 85270 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 | | | || || ||| |||| |||||| || ||||| | ||| |||||| ||| | | Sbjct 85269 TTCATG-CCTAGGAGA-GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAA 85212 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | |||||||||| || ||| | | | ||| | || ||| | |||| | Sbjct 85211 CAGCGTCGGTGATAATGTCCTTGATTATTTGCTTGCTGGCTCGGTGCTTAAGATGCGAGT 85152 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 || || || |||||||| ||||| ||||| || | ||| || ||||||||| || Sbjct 85151 GCAACAGACATGCAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTGGAGA 85092 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | ||||||||| || || || || |||||||| || || | ||| || || Sbjct 85091 AGGTGAGGCCGGGCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGC 85032 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||| |||||| || || ||||||||||||| ||||| | |||| ||| || | Sbjct 85031 TGAAGAAGATGCCCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCT 84972 Query 133067 TG--CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 || ||| ||||| || | ||||| || || |||| Sbjct 84971 TGTCCTG--AATCCAACGAATGGCCCAGTCTGCTTTTT 84936 Score = 109 bits (120), Expect = 5e-19 Identities = 190/276 (69%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||| | || || ||| || || |||| ||||| | |||||||| ||| || || Sbjct 84814 GTAGCTATCAATCAGGAGAGAGTATGTTTCAGAGTGAATATTCTCCATCATGATCTGGAA 84755 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 || || ||||| || ||||| ||||| || || ||||||||| | || || Sbjct 84754 TCCATAGAAGCAACGAGCCTCCGGAACCTGAACCTCGCCGCTGAAACGCTCAAGCAAGTT 84695 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| ||||| |||||||| || || || || |||| | ||| |||||| | Sbjct 84694 TTCATTGACAATGCCGTCAGAAGCAGCAAAGAATGCCAAAATGTGTGAGATGAAGTATTT 84635 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||| ||| || | ||| ||| || |||||||||||| || | ||| || Sbjct 84634 CTCGTCGTCGCTCAGACGGTTGTTCCAATCGTGCAAGTCCTTGGACAGATCGATCTCTTC 84575 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || || ||||| || |||||||| Sbjct 84574 GGCCGTCCAGAAAGAGGCTTCGGCCTTCTTGTACAT 84539 >seq2753 Length=281039 Score = 134 bits (148), Expect = 1e-26 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || || |||||| | || || ||| | Sbjct 117779 AAGATGCAGATTTTCGTCAAAACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 117838 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 117839 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 117897 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || || || | || || || ||||| || || | |||||||| | |||||| Sbjct 117898 CCAGCAACGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 117957 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || ||||| ||||||||||| Sbjct 117958 CAACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGCTGCG 117996 >seq2517 Length=100120 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || | |||| | Sbjct 66331 TTCGTCAAGACTCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACGATC 66390 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || ||||||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 66391 GACAATGTCAAGTCCAAAATCCAAGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATTG 66450 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| || ||||| |||||||||||| || ||| Sbjct 66451 ATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGAACCCTGTCCGACTACAACATTCAGAAG 66510 Query 38433 G 38433 | Sbjct 66511 G 66511 >seq2339 Length=71557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||| || |||| |||||| | | Sbjct 19239 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 19180 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | || || || | || || |||||||| |||||| ||||| Sbjct 19179 GACACTATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAAT-CCCGCCTGACCA 19121 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || ||||| || || | |||||||| |||||||| Sbjct 19120 GCAGCGTCTAATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCTGACTACAA 19061 Query 38423 CATCCAAAAGGA 38434 ||| || ||||| Sbjct 19060 CATTCAGAAGGA 19049 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || || || ||| | || || || | | Sbjct 18479 ATGCAAATTTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTGGAATCTTCT 18420 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| || || | ||||| ||||| || || ||||||| Sbjct 18419 GACACCATCGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 18360 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| || || || |||||||| |||| ||||| || | ||| |||||| Sbjct 18359 CAACGACTTATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGATTACAAC 18300 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| || ||||| | ||||| ||| || | || || Sbjct 18299 ATCCAGAAGGAAAGCACCTTGCATCTCGTGCTTCGTCTGCGTGGTGG 18253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500149235608960