Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2339 111 6e-19 >seq2339 Length=71557 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || |||||||| | || || ||||| || Sbjct 18707 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 18648 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | || || ||||||||||||||||| ||||| ||||| ||| Sbjct 18647 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAA 18588 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | ||||| || || || ||||| |||||||| | || || ||| Sbjct 18587 CAGCGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 18528 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || || || || Sbjct 18527 ATTCAGAAGGAGTCTACTCTGCATTTGGT 18499 Score = 102 bits (112), Expect = 3e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || |||||||| || || || || ||| Sbjct 19239 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGTCGTCT 19180 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || ||||| |||||||| ||||| || ||||| || Sbjct 19179 GACACTATTGACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGAATCCCGCCTGACCAG 19120 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| |||| ||| | || || || ||||| ||||| | || | | || || || Sbjct 19119 CAGCGTCTAATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACCCTTTCTGACTACAAC 19060 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 ||| | ||||| ||||||||||| Sbjct 19059 ATTCAGAAGGAGTCAACACTTCAC 19036 Score = 86.0 bits (94), Expect = 2e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131 |||| || || || || || ||||| || || || || || | ||| || | | || Sbjct 18913 TGACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGT 18854 Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191 || ||||| || |||||||| || ||||||||||| || || || || ||| | || | Sbjct 18853 CGAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCTGGCA 18794 Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251 | || || |||||||| | ||| | | || || |||||| | ||||| | || |||| Sbjct 18793 AGCAGCTGGAAGATGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAATCTACTCTTC 18734 Query 391252 AC 391253 || Sbjct 18733 AC 18732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975622991941052