Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq157 190 3e-43 seq2795 136 5e-27 >seq157 Length=27557 Score = 190 bits (210), Expect = 3e-43 Identities = 536/821 (65%), Gaps = 3/821 (0%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || || || | ||| || ||||||||||| ||| Sbjct 18780 TCATCCTCCTCCTTGTACTTCTCGGCTTCAGACAGCATGCGCTCGATGTCTTCTTTGGAT 18721 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||||||||| | | |||| || || Sbjct 18720 AGACGACCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCGGTGCCCTTTTCAACA 18661 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| |||||||| ||||| | ||| || | || | || || || | Sbjct 18660 GCAGAGACATTCATGATACCATTGGCATCGAGATCAAAGGTAACTTCGATCTGAGGAACA 18601 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | ||||| | || | | |||| ||| | Sbjct 18600 CCACGGGGAGCGGGGGGAATGCCAGTAAGCTCAAACTTGCCCATGAGGTTGTTGTCCTTG 18541 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || || || ||| |||| | ||| |||| |||| || || || Sbjct 18540 GTGCGCTGTCGCTCGCCCTCAAAGACCTGAATGAGCACCCCAGGCTGGTTGTCAGAAAAG 18481 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | | ||||| | |||||| || || || | ||||| | | ||| Sbjct 18480 GTCGAGAAAACCTCCGACTTCTTGGTTGGAATGGTTGTGTTACGGGGAATGAGCTTCGTC 18421 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| || || | || ||||||| || | ||||| | || || | Sbjct 18420 ATCATTCCACCGGCGGTCTCAATGCCCAGAGACAAGGGAGCGACGTCAAGTAGCAAGATT 18361 Query 6989 TCTTGAACAGA-TTCG--TTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | ||| || | ||||| | ||||| || || ||||| | || ||| Sbjct 18360 TCGTTGGTAGACTTTGAAGAAGTGTCACCAGACAAGATAGCAGCCTGGACAGCGGCACCG 18301 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || ||||| || ||||| || | || || | ||||| ||||| || || || Sbjct 18300 TACGCAACAGCCTCGTCAGGGTTGATAGACTTGTTGGGCTCTTTGCCGTTGAAGTAGTCG 18241 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || || ||| || ||||| || || ||||| ||||| || || |||| Sbjct 18240 GAGATGAGTTTCTGGATTCGGGGAATTCGGGTGGAACCACCAACCAAGACAATCTCATAA 18181 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 |||| ||||| || ||||| | ||| || |||||||| | || Sbjct 18180 ACTTGAGATTTGTCAATCTTGGCGTCGGTGAGAACACGGTCGACAGGCTGGATGGTGGAG 18121 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| ||| || || || ||||| || |||||||| | || |||||||| Sbjct 18120 CGGAAAAGATCCTGACAAAGCTCTTCGAAACGGGCCCGGGTAATAGGGGTGTAGAAATCG 18061 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| ||| |||||||| ||||| || ||||| || | ||||| | || ||| Sbjct 18060 ATACCCTCGAATAGAGAATCAATCTCAATCGTAGTTTGAGCTGCAGAAGAGAGGGTGCGC 18001 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || || || || || || || || | |||||| ||||| || Sbjct 18000 TTGGCACGTTCGCAAGCAGTACGGAGACGACGCAGGGCGCG 17960 Score = 172 bits (190), Expect = 7e-38 Identities = 491/747 (66%), Gaps = 16/747 (2%) Strand=Plus/Minus Query 7401 TATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || |||||||||| || ||||| || || || | | ||||| || || | |||| Sbjct 17890 TACCTTTCTTATGCTTGCGTTTGAATTCATTGACA-AAGTGGTTAACAAGGCGGTTATCG 17832 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || |||||||||||||| || || || ||||| | ||||| || |||||||| | Sbjct 17831 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACCTCGAAGATACCCTCC 17772 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT- 7578 ||||| | | | || ||||| || ||||| || || || || ||||| | || || Sbjct 17771 TCAATTGTGAGGAGAGACACATCGAAGGTACCGCCGCCTAGATCGAAAATCAAGACATTG 17712 Query 7579 --CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | | ||| || ||||| |||||||| || || ||||| || || || || || Sbjct 17711 CGCTCACCCTCGACT---TTCTTGTCGAGACCATAGGCAATAGCGGCGGCAGTAGGCTCG 17655 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || |||||||| ||| || || ||||| | || || || || || || || Sbjct 17654 TTGATGATACGAAGGACGTTGAGTCCGGCAATGCGACCGGCGTCCTTGGTAGCCTGCCGC 17595 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGA-CTTTCTTACCGAG 7755 || || ||||| |||||||| ||||| || ||||| ||| || || | | | || || Sbjct 17594 TGAGAGTCGTTGAAGTAGGCGGGGACAGTGACGACAGCGCTCGGGACCGATGTGCCCAAG 17535 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 | | || || || || ||| ||| | || | ||| || || || ||||||| | Sbjct 17534 A-AGCCCTCTGCAATCTCGCGCATCTTGATGAGGATCATGGAAGATATTTCTTCAGGTGT 17476 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || | ||| ||| || || || || || | | ||| ||||| | | Sbjct 17475 GAATTCCTTCTCTTCGCCTTTGAATTCGACCTTGACCATAGGTTT---GCCTTGTCTTTC 17419 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || ||||| | | | | |||||||| | || |||| | || ||||| | Sbjct 17418 AATCACCTTGAAGGGAAAGTGCTTCATATCAGCCTGAACCTCCGGATCGTCGAACTTGCG 17359 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || | ||| || || || || || ||||||| |||||||| || || ||||| Sbjct 17358 GCCAATCAAACGTTTGGCGTCGAAGACGGTGTTTTGAGGGTTCATAGCGACCTGATTCTT 17299 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || || || ||||| || | || | || ||||| | ||||| || || Sbjct 17298 GGCGGCATCACCAATCAGACGCTC---GGTGTCATTGAATGCGACAAAAGATGGAGTAGT 17242 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || || || || | ||||||||| ||||| | | ||| | ||||| Sbjct 17241 TCGGTTACCCTGCTCATTGGGAATAATTTCGCATCGGTCATCGCGATAGATAGCCACGCA 17182 Query 8116 CGAATACGTTGTTCCTAAATCAATACC 8142 || ||||| || || || || ||||| Sbjct 17181 AGAGTACGTGGTACCCAAGTCGATACC 17155 >seq2795 Length=266095 Score = 136 bits (150), Expect = 5e-27 Identities = 495/763 (65%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || ||||| | || ||||| || || |||||||||||||| || | || | || | Sbjct 14365 GCCTGGACGGCAGCACCGTAGGCAACGGCCTCATCGGGGTTGATGCTCTTCTCAAGCTTC 14424 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 ||||||| ||| |||| || | | | || || || || || || || || ||||| Sbjct 14425 TTACCGTCAAAGAAATCGGACAGAAGCTTCTGGATCTTGGGAATACGGGTAGAACCACCA 14484 Query 7148 ACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCG 7207 ||||| ||||| || | || || || || ||||| | || || | || Sbjct 14485 ACCAAGACGATCTCGTCAACCTTGGACTTCTCGATGCCAGCATCCTTGAGAACCTGAGCG 14544 Query 7208 ACAGGTTCCATACATTTACGGAACAAGTC----CATACACAGTTCCTCAAAACGTGCACG 7263 ||||| || | | | || ||| | | | || ||| | || ||||| ||||| Sbjct 14545 ACAGGCTCAAGGG--TGCCAGAGAAAGCCTTGGCGTTCA-AGT-CTTCGAAACGAGCACG 14600 Query 7264 GGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG 7323 ||| |||| | ||| || | || ||| | | || ||||| || ||||| | || Sbjct 14601 GGTGATGGTCATGGTGAAGTCCTCACCATCGAAGAGGGAGTCAATCTCGATGGTGGCCTG 14660 Query 7324 TGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | || || || ||||| || ||||| || || ||||| | | || ||| Sbjct 14661 GGCACCGCTG--GACAAGGTACGCTTGGCACGCTCGCAAGCAGTTCGAAGTCTTCGCAGG 14718 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-G 7440 ||||| | | |||| ||||| ||||| || || | ||||||| | ||| | Sbjct 14719 GCACGAGCATCACCGCTCATATCCTTCTTGGACTTGCGGGTGAACTCTTTCTTGCAGTAG 14778 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 |||| ||| | | |||||||| | |||||||| || || || || ||||| || || Sbjct 14779 TCGAGCAAGT-TGGTGTCGAAATCCTGACCACCCAGATGGGTGTCACCAGCGGTAGCCTT 14837 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| |||| ||| || | ||||| | | || ||||| || ||||||||||| || Sbjct 14838 GACAGTGAAGACACCACCCTGGATGTTGAGAAGAGACACATCGAAAGTACCACCACCAAG 14897 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTATCGAGACCGTACGCGAT 7617 || | || || ||||| || | || ||| | |||||||| || || Sbjct 14898 ATCGTAGATCAGGACGTTGCGCTCCTTCTCAGACTTGCCAGAGCCCAGACCGTAGGCAAT 14957 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 || || || || || || ||||| |||| || |||| || || |||| ||| | | | Sbjct 14958 GGCGGCAGCGGTGGGCTCGTTAATGATACGGAGGACA-TTGAGACCAGAAATGGCACCGG 15016 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || || || || || || || ||||| |||||||| ||||| || | ||| || | Sbjct 15017 CGTCCTTGGTAGCCTGACGCTGATTGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCCT 15076 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 | || ||||| || || | | || || || || ||||| Sbjct 15077 TCTCAACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCCTTCAT 15119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635102877305960