Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2389 286 4e-72 seq3515 107 2e-18 >seq2389 Length=61879 Score = 286 bits (316), Expect = 4e-72 Identities = 1119/1738 (64%), Gaps = 41/1738 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || ||| ||||||| || || | ||||| ||| Sbjct 41112 CCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGAGCGCGTT 41171 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 ||||| || ||| || |||||| | | |||| |||||| |||| || |||||| Sbjct 41172 TTGGAAACCTACCACCTCATGTCCAGCAAGCTCTTCACCCACGCCTCACCTACACTCTTC 41231 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || | || |||| ||||||||| | | | ||||| || Sbjct 41232 AACGCCGGTACCCCCCAATGTCAGCTGTCTTCTTGTTTCCTAGTCGACATGAAGGACGAC 41291 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | || || |||| |||||||| |||||| ||||| ||| ||||||| Sbjct 41292 AGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 41351 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| || || |||| || | || | | ||| |||| || || || Sbjct 41352 GGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTATATTGCCGGCACCAAC 41411 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || ||| | || || ||||| |||||||| || || ||| ||| || | || || Sbjct 41412 GGCACATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTT 41471 Query 111972 AACCAAGCTGGGCGTC-GCAAGGGATCT------ATCGCAGTCTATCTTGAGCCATGGCA 112024 |||| ||||| | |||| || || | || ||||||| ||||| ||||| Sbjct 41472 GACCA----GGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTATCTCGAGCCTTGGCA 41527 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 ||| ||| | | || || ||||| ||||| ||||| || | || || | ||| Sbjct 41528 CGCAGATGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGA-AAACCGTG 41586 Query 112085 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 | ||||| |||||| ||||| ||||| |||||||||||||||||| | || || ||| Sbjct 41587 CTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGA 41646 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || ||||| | ||| | ||||| || || ||||| || | ||| | || | Sbjct 41647 ACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGATTGCTATGGCG 41706 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTG 112262 |||||||||| || |||||| ||||| ||| || | || ||| | ||| | Sbjct 41707 AGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGC-AAGACTATT 41765 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | || | || | | ||| | | || ||| |||| || || || || || | || | Sbjct 41766 CGTGC-CCAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACAGAAACGGGCAACCCCTT 41824 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 |||||| ||||| || ||||| ||| |||||| || || ||||| |||| || Sbjct 41825 TATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGAACCATTCG 41884 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || |||||||| || || || ||| | || | | | |||||| |||||||| Sbjct 41885 CAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTTGCTGTGTG 41944 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-ATTTGATT 112500 ||| | || || | ||||| || | ||| || | | | | || | | | || | Sbjct 41945 CAACTTGGCCTCTCTTGCTCTTCCTGCCTTTGTCGA-CTACAAAGAAGGCCGCTACGACT 42003 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || || ||| ||||| |||| | |||||| Sbjct 42004 TCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGATCATTGATG 42063 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||||| ||||| ||||| || || ||| |||| || || || ||| Sbjct 42064 TCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACCCATCGGTG 42123 Query 112621 TCGGTGTCCAAGGTCTCGCGGATG-TATTCATTCTTTGTCGCCACGCATTTGATTCCGAC 112679 | ||||| || ||||| || || | | ||| | || || ||| | || || || | Sbjct 42124 TTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTG-CGCATGCCCTTCGAGTCTCCC 42182 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 || || || |||| || || || ||||| || || ||||| || || || Sbjct 42183 GAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCCTGACAGCC 42242 Query 112740 AGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA 112799 | ||| |||| | | | || || || ||||| |||| ||||| || || Sbjct 42243 TCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTCCCGCCTCG 42302 Query 112800 CAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC-----ACTACGAC 112853 |||| | ||||| || || |||| |||| || |||| |||| | || Sbjct 42303 GAAGGTATTCTTCAGTTCGACATGT-GGAATGT-----CAAGCCTTCTGAGTTGTGGGAG 42356 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGG 112911 |||||| ||| ||||| | ||||||||| | ||| |||| ||| || || || | | Sbjct 42357 TGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTTGCTGCTCG 42414 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || ||||||||| | ||||| ||||||| ||||| |||||||| || | Sbjct 42415 CTCCCATGCCCACCGCCTCCACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAGCCAT 42474 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 ||||| | ||||| || | | | | | | || || || || | | |||||| Sbjct 42475 ACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAACCCCT 42534 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 113091 ||| | | || ||| || || ||||||||||| | | |||||| | | ||| Sbjct 42535 GGCTCCTCAAGGATCTCGTCGATATGGGTCTCTGGTCGGATGCCATGAAGAACCGCATCA 42594 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 | | | ||||||||||| || || |||| || | || || ||| | | Sbjct 42595 TTGCCGAGAACGGTTCCATTCAGAACATCCCCAATATCCCCGCCGACATCAAGGCTCTCT 42654 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 || || |||||||| || | |||| || | ||||| || ||||| ||| Sbjct 42655 ACAAGACCGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCGGCCGATCGCGGTG 42714 Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 ||| || || | |||| ||| | || | |||| | ||| || ||| ||| Sbjct 42715 CCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGGGCAA 42772 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 | || | ||||||||| | | |||||| ||||||||| ||||| ||||| ||| Sbjct 42773 GATCACCTCTATGCACTTTGCTGGCTGGAAGTTGGGTCTCAAGACGGGCATGTACTAC 42830 >seq3515 Length=139295 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 102262 ||| ||||| ||||||||| ||| |||| | | |||| |||||||||||||| || Sbjct 85012 TGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTCTGGCTCAAGAAGCGTGG 85071 Query 102263 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCA 102322 ||| ||||| || ||| |||||||||||| |||||||| ||||| ||||| | ||| Sbjct 85072 TCTGATGCCCGGCCTCACCTTCTCCAACGAACTTATCTCCCGTGATGAGGGTTTGCACAC 85131 Query 102323 AGAGTTTGC 102331 ||| ||||| Sbjct 85132 AGACTTTGC 85140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620713155273680