Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2389 262 5e-65 >seq2389 Length=61879 Score = 262 bits (290), Expect = 5e-65 Identities = 1101/1705 (65%), Gaps = 55/1705 (3%) Strand=Plus/Minus Query 109378 AATTGGATTGGTCGAGCTTTCGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCA 109437 || ||||| ||| ||| |||| || ||| | || ||||| ||||| |||||||| Sbjct 42865 AACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTGAGACCC 42806 Query 109438 GCCTTCCATGCGTACATA-TGCATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAA 109496 |||||| || || | ||||| || | || ||| | || ||| || ||| Sbjct 42805 AACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTTGCCCATAGTAGGATCCTTCATGTG 42747 Query 109497 CAAGTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGAT 109556 | ||| | |||||| ||||| ||||| || ||| ||||| |||||||| | ||| | Sbjct 42746 AACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGATCGGCCGCCATCTGGATAAC 42687 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 | || ||| ||||| || |||||||| | | |||||| || |||| || | Sbjct 42686 ATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATATT 42627 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGA 109673 |||||| ||||| || ||| || | |||| | | |||||| | | ||| Sbjct 42626 GGGGATGTTCTGAATGGA---ACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCCGA 42570 Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACC 109733 ||||||||| | | |||||| | | || |||||| || |||||||| Sbjct 42569 CCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACC 42510 Query 109734 AGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCC 109793 ||| | || || |||| ||||| | |||||| || || || ||||||||||| || Sbjct 42509 AGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACC 42450 Query 109794 TAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 || ||||| | ||||| || |||||||||||||| | || | ||| || | ||| Sbjct 42449 CAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACC 42390 Query 109854 CTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTC 109913 | | ||| | | |||| || |||||| || | || ||| | || || Sbjct 42389 GTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTC----CCACAACTCA--GAAGGCTT 42336 Query 109914 ACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTC 109973 ||| |||||| || ||||| | ||| || | || ||||| |||||||| | Sbjct 42335 GACATTCCACATGTCGAACTGAAGAATACCTTCCGAGGCGGGAGAGCCCTTGAAGGTAGA 42276 Query 109974 GTACGACCCCTCAACCTCGGCCAACTCGGATGA-AGCCTCT-AGTGCCGCATGATACATA 110031 ||| | || | | | ||||| ||| | || || || | || || || || || || Sbjct 42275 GTAGGGGCCTTGCTCTTTGGCCAGCTC--AAGAGAGGCTGTCAGGGCAGCGTGGTAGATG 42218 Query 110032 GTCTCAAAAATATGAGCATTCATGAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCA 110088 ||||| || || || || |||| || | ||| | | |||||||| | | Sbjct 42217 GTCTCGAAGATCTG---CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCA-TGCG 42162 Query 110089 CAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCAT 110147 || || || ||| | || || |||||||||||||| | ||| ||||| ||||| ||| Sbjct 42161 CAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCAT 42102 Query 110148 GTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATT 110207 ||| | ||||| || | ||||||| |||| || |||| | ||||| || Sbjct 42101 GTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTT 42042 Query 110208 --CTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCC 110265 || | || | | |||| || ||||| || | | | ||| | | | ||| Sbjct 42041 ACGGACGAC-CACT-TGAGTGACCTCGTGGAGCTTCTGGAAGTCGTA-GCGGCCTTCTTT 41985 Query 110266 TTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTT 110324 || | |||| | || ||||||| ||| || | |||||||||| | ||| || Sbjct 41984 GTAGTCGACAAAGGCAGGAAGAGCAAGAGAGGCCAAGTTGCACACAGCAACCTCATCAGG 41925 Query 110325 GTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTT 110384 | | ||| || | || ||||| |||| |||||| || |||| |||| |||||| Sbjct 41924 GGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTT 41865 Query 110385 CTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGT 110444 ||| || || |||||| |||||||| || ||||| | ||| | || ||||| || Sbjct 41864 CTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCTGT 41805 Query 110445 CTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAG--TTGCGTTAGCGA- 110500 ||| |||| ||| |||| | ||| | | || | ||| | | || ||||| || | Sbjct 41804 CTGGGACTCGAGGATGGAGTACCAGAGCTTCTG-GGCACGAATAGTCTTGCG---GCCAC 41749 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAA 110560 | || || ||| ||||| ||| | ||||||| |||| || || ||||| | Sbjct 41748 GGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCA 41689 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || || || |||||| | ||||| ||||| || || || || | ||||| Sbjct 41688 GGCCGGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCA 41629 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680 |||| || || || ||||||| || ||| ||||| || ||| ||||| | | Sbjct 41628 TGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGC 41569 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGA 110740 | ||||| || | || | |||||| | | ||| | |||||| || |||||||||| Sbjct 41568 CGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTCGAGATAGA 41509 Query 110741 CAGC-GATG-----GATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794 || ||| | || ||| | | || |||||| ||| || | || ||| | Sbjct 41508 TGGCAAATGCACCAGGTCGCTT--GTTG-CCGCCCTGGTCAACGTATCTGGCAGTGTTGT 41452 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 ||||||| | ||||| ||||| || || | |||| || || || || ||| | Sbjct 41451 TGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATATAAG 41392 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | | ||||| ||| ||||| | || || |||||||| ||| ||| || Sbjct 41391 AGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCA 41332 Query 110915 GTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973 ||||| ||| |||| || | || ||||| ||||| || |||| || | | | Sbjct 41331 TGGCACAGGTCT-TGAGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACT 41273 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 || || |||||||||| |||| | || || || || |||||||||||||||| || Sbjct 41272 AGGAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCG 41213 Query 111034 TGAATGAACAGACCTTG--GGACAT 111056 || ||| ||| |||| |||||| Sbjct 41212 TGGGTGA--AGAGCTTGCTGGACAT 41190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588948251868200