Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2389 298 6e-76 >seq2389 Length=61879 Score = 298 bits (330), Expect = 6e-76 Identities = 1172/1809 (65%), Gaps = 53/1809 (3%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTT 105654 |||||||| || |||||||| || ||||| || || | |||||||| | || ||| Sbjct 42829 TAGTACATGCCCGTCTTGAGACCCAACTTCCA-GCCAGCAAAGTGCATAGAGGTGATCTT 42771 Query 105655 GGACATCGTTGGACTTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGA 105712 | ||| || ||| | |||| || || | ||| |||| |||| || ||| | Sbjct 42770 GCCCATAGTAGGATCCTTCATGTGAACGTTGAGCGACTGGGACT--GGTCGATAAAGGCA 42713 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 || || | |||||||| | || |||| | || ||||| || || |||| Sbjct 42712 CCGCGATCGGCCGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAG 42653 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTG 105829 ||| |||||| || | ||||||| | ||| || ||||| ||||| | | || || Sbjct 42652 AGAGCCTTGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACCGTTCTCGGCAATG 42593 Query 105830 ACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 | || | | |||||| | | ||||| ||||| || | |||||| |||| ||| Sbjct 42592 A---TGCGGTTCTTCATGGCATCCGACCAGAGACCCATATCGACGAGATCCTTGAGGAGC 42536 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 |||||| | | || || || || | | | | | | || ||||| | |||| Sbjct 42535 CAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTG 42476 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 106009 || || |||||||| ||||| ||||||| ||||| | ||||||||| || ||||| || Sbjct 42475 TATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGA 42416 Query 106010 GCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCC 106067 || | || || || ||| |||| ||| | |||||||| | ||||| ||| |||| Sbjct 42415 GCGAGCAGCAACGA--GTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCC 42358 Query 106068 AGTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGA 106125 | || | | || || || || |||| |||| || || ||||| | |||| || Sbjct 42357 ACTCCCACAACTCAGAA-GGCTTGACATTCC-ACATGTCGAACTGAAGAATACCTTCCGA 42300 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 106185 | |||||| |||| || || |||| ||||| ||| |||| ||| || | Sbjct 42299 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCA-AGAGAGG 42241 Query 106186 CTC-CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 106244 || ||||| ||||| || ||||| || ||||| | || | ||| ||| || Sbjct 42240 CTGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGG 42181 Query 106245 CTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAA 106303 || || || | ||| || | || ||| | || || ||||| |||||||| | | Sbjct 42180 GAGACTCGAAGGGCATGCG-CAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACA 42122 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTG 106363 || || |||| |||||||| || || || || ||||| ||| ||| || Sbjct 42121 CCGATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACA 42062 Query 106364 TCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAA 106423 ||||||| ||| || || | || | | |||| || || || || | | Sbjct 42061 TCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAG 42002 Query 106424 TCAAAAGTGCGAGTCTCTTCATT-GACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 || | || ||| | | | |||| | ||||| || | || ||||| ||||| Sbjct 42001 TCGTAGCGGCCT-TCTTTGTAGTCGACAAAGGCAGGAAGAGCAAGAGAGGCCAAGTTGCA 41943 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 ||||| |||||| | |||||| | || || || |||| |||||| || Sbjct 41942 CACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCG 41883 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 ||| || |||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| | Sbjct 41882 AATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAA 41823 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTA 106661 ||| | ||||| || ||||| |||| ||| || | | ||| | | || | ||| | Sbjct 41822 GGGGTTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTG-GGCACG-- 41766 Query 106662 CAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 ||| | || |||| || ||||| ||| ||||| |||||| || |||||||||| Sbjct 41765 -AATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCT 41707 Query 106719 CACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 | ||| || || | || || || || || ||||| | || | ||| | || Sbjct 41706 C-GCCATAGCAATCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCG 41648 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 106837 || || || ||||||||||| || ||||| |||||||| | ||||| || | | Sbjct 41647 TTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGA 41588 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 106897 || ||||| | || ||||| ||| || ||||| || || | | ||| ||| Sbjct 41587 GCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACATCTGCG 41528 Query 106898 TGCCATGGCTCAAGATAG------ACTGCGATAGATCCCTT-TCGACGCCCAGCTTGATT 106950 ||||| ||||| |||||| | ||| || || ||| | | ||||| || | Sbjct 41527 TGCCAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCC----TGGTC 41472 Query 106951 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 107010 || || | || ||| ||| || || |||||||| ||||| || || | ||| || Sbjct 41471 AACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCC 41412 Query 107011 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070 || || || |||| ||| | || | | |||| || || || ||||| Sbjct 41411 GTTGGTGCCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACC 41352 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 |||||| ||| ||||| ||||| | | ||||| | |||||||||| || Sbjct 41351 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCT 41292 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 107190 ||| ||||| || ||| ||||| ||| |||| ||| | || ||||| || || Sbjct 41291 GTCGTCCTTCATGTCGACTAGGAAACAAGAAGACAGCTGACATTGGGGGGTACCGGCGTT 41232 Query 107191 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCC 107248 |||||| || |||| ||||| ||| | | |||| |||||| || ||| || ||| Sbjct 41231 GAAGAGTGTAGGTGAGGCGTGGGTGA--AGAGCTTGCTGGACATGAGGTGGTAGGTTTCC 41174 Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGG 107308 || || ||||||| || || || |||| || || ||||||| ||||| || Sbjct 41173 AAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGA 41114 Query 107309 GGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAG 107367 ||| || | || |||| | ||| ||||||| | || |||| || || |||| Sbjct 41113 GGTCGCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATC-TCTCCAGAGTCTTGAA 41055 Query 107368 ACCAAAGTA 107376 |||||||| Sbjct 41054 GCCAAAGTA 41046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589953004529560