Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01]
3,769 sequences; 35,655,008 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2339 113 3e-20
seq2753 98.7 6e-16
>seq2339
Length=71557
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| | ||||| ||| || ||||||||||| ||||| |||||| | || |||| ||
Sbjct 19030 AACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTC 19089
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| ||||| || || ||||| || |||||||| |||| | |||||||| ||
Sbjct 19090 AAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATCCTG 19149
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||||| ||||| | || | ||| | ||| || |||| || ||||| ||
Sbjct 19150 AATCTTCGACTTGACATTGTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTT 19209
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| ||||| || ||||| |||||
Sbjct 19210 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 19239
Score = 96.9 bits (106), Expect = 2e-15
Identities = 144/202 (71%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
|||||||| ||||| ||||| || || || | || | || |||||||| ||||||
Sbjct 18283 GTGCTTTCCTTCTGGATGTTGTAATCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 18342
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || |||||||||||||| | || | ||||||||||| |||||| ||||
Sbjct 18343 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTG 18402
Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960
|| || | ||||| ||| | || || || | ||| || || ||||| || |
Sbjct 18403 AC--AT--TGTCGATGGTGTCAGAAGATTCCACTTCCAAGGTAATAGTCTTTCCAGTCAA 18458
Query 34961 AGTCTTCACAAAGATCTGCATA 34982
||||| ||||| || ||||||
Sbjct 18459 GGTCTTGACAAAAATTTGCATA 18480
>seq2753
Length=281039
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||||| || ||||| ||||| ||||| ||| | || |||| ||
Sbjct 117990 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 117931
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || |||||||||||||| | || | |||||||||||
Sbjct 117930 AGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 117871
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || | ||| || || | ||| || || ||
Sbjct 117870 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 117811
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|||||||| || || || || |||||||| ||
Sbjct 117810 CCCGTGAGGGTTTTGACGAAAATCTGCATCTT 117779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324618688057032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |