Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2339 113 3e-20 seq2753 98.7 6e-16 >seq2339 Length=71557 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| || ||||||||||| ||||| |||||| | || |||| || Sbjct 19030 AACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTC 19089 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || ||||| || |||||||| |||| | |||||||| || Sbjct 19090 AAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATCCTG 19149 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| ||||| | || | ||| | ||| || |||| || ||||| || Sbjct 19150 AATCTTCGACTTGACATTGTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTT 19209 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||| ||||| Sbjct 19210 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 19239 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 |||||||| ||||| ||||| || || || | || | || |||||||| |||||| Sbjct 18283 GTGCTTTCCTTCTGGATGTTGTAATCGCTCAGCGTGCGGCCGTCTTCCAGCTGCTTTCCG 18342 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || |||||||||||||| | || | ||||||||||| |||||| |||| Sbjct 18343 GCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGATTTG 18402 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| ||| | || || || | ||| || || ||||| || | Sbjct 18403 AC--AT--TGTCGATGGTGTCAGAAGATTCCACTTCCAAGGTAATAGTCTTTCCAGTCAA 18458 Query 34961 AGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| || |||||| Sbjct 18459 GGTCTTGACAAAAATTTGCATA 18480 >seq2753 Length=281039 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||| ||||| ||||| ||| | || |||| || Sbjct 117990 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 117931 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || |||||||||||||| | || | ||||||||||| Sbjct 117930 AGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 117871 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 117870 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 117811 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| || || || || |||||||| || Sbjct 117810 CCCGTGAGGGTTTTGACGAAAATCTGCATCTT 117779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324618688057032