Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2389 113 5e-20 >seq2389 Length=61879 Score = 113 bits (124), Expect = 5e-20 Identities = 304/463 (66%), Gaps = 4/463 (1%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| || || ||||| || | | | || || || || || |||||||| | | Sbjct 41717 CTCAAACTCCTCGCCATAGCAATCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGT 41658 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||||||| | | |||| || | |||| || | |||||| ||||| ||||| | || Sbjct 41657 CCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAA 41598 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | || | || | |||||| ||||| ||| || | ||||||||||| | Sbjct 41597 GAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAA 41538 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| || ||||| || || | ||| || || | | |||| ||||| || || || || Sbjct 41537 CACATCTGCGTGCCAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCC 41478 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 || || | ||||||||||| ||||| | || | | ||| || | || || || || Sbjct 41477 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGA 41418 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATA 48482 | | || ||||| || | ||||||| || |||| | || | || || Sbjct 41417 TGTGCCGTTGGTGCCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA--G 41360 Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || |||||||| ||||| || || || | ||||| || || || || || || || Sbjct 41359 CCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCG 41300 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACA 48585 || || || || || |||| | | ||| |||||| ||||| Sbjct 41299 TCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAAGAAGACA 41257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562082317649160