Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq157 156 3e-32 seq2339 100 2e-15 seq304 95.1 1e-13 >seq157 Length=27557 Score = 156 bits (172), Expect = 3e-32 Identities = 465/712 (65%), Gaps = 13/712 (2%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 || || |||||||| | |||||||||||| | ||||| || | || || |||| || Sbjct 17963 GCCCTGCGTCGTCTCCGTACTGCTTGCGAACGTGCCAAGCGCACCCTCTCTTCTGCAGCT 18022 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| || ||||| | ||||| |||| ||||| || |||| | || |||||| | Sbjct 18023 CAAACTACGATTGAGATTGATTCTCTATTCGAGGGTATCGATTTCTACACCCCTATTACC 18082 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 ||||| || ||||| ||||| ||||| || | || || | || || || Sbjct 18083 CGGGCCCGTTTCGAAGAGCTTTGTCAGGATCTTTTCCGCTCCACCATCCAGCCTGTCGAC 18142 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | ||| | | || | |||||||| ||||| |||| |||| ||||| | |||||| Sbjct 18143 CGTGTTCTCACCGACGCCAAGATTGACAAATCTCAAGTTTATGAGATTGTCTTGGTTGGT 18202 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC--TTATTTCAATGGTAAAA 552192 || || || ||||||| || || |||| | | | | || ||||| || ||| Sbjct 18203 GGTTCCACCCGAATTCCCCGAA-TCCAGAAA-CTCATCTCCGACTACTTCAACGGCAAAG 18260 Query 552193 AATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | || | | | || || || ||||||||||| || |||||||| | || || | Sbjct 18261 AGCCCAACAAGTCTATCAACCCTGACGAGGCTGTTGCGTACGGTGCCGCTGTCCAGGCTG 18320 Query 552253 CTATTCTTTCTGGACAAACTGATGAAA-----AACTACAAAATATTG-TACTTGTAGATG 552306 |||| | ||||| | ||| | || | | || |||| ||| ||||| || | Sbjct 18321 CTATCTTGTCTGGTGACACTTCTTCAAAGTCTACCAACGAAATCTTGCTACTT---GACG 18377 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 | |||| | ||||| || | || || | || || || ||||| || || || Sbjct 18378 TCGCTCCCTTGTCTCTGGGCATTGAGACCGCCGGTGGAATGATGACGAAGCTCATTCCCC 18437 Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426 | || || || ||||| || || || || || || || | ||| || || || Sbjct 18438 GTAACACAACCATTCCAACCAAGAAGTCGGAGGTTTTCTCGACCTTTTCTGACAACCAGC 18497 Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486 ||| || ||||| | ||||| || || || | ||| || || || || | Sbjct 18498 CTGGGGTGCTCATTCAGGTCTTTGAGGGCGAGCGACAGCGCACCAAGGACAACAACCTCA 18557 Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 | || | ||| | | || ||||| || ||||| ||||| || || || || |||| Sbjct 18558 TGGGCAAGTTTGAGCTTACTGGCATTCCCCCCGCTCCCCGTGGTGTTCCTCAGATCGAAG 18617 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||| || ||| ||||||||||||| || ||||||| ||||| ||| || Sbjct 18618 TTACCTTTGATCTCGATGCCAATGGTATCATGAATGTCTCTGCTGTTGAAAA 18669 Score = 140 bits (154), Expect = 3e-27 Identities = 326/486 (67%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||| ||||||| || |||||| ||||||||||||||| ||| | |||| || Sbjct 17212 GAAATTATTCCCAATGAGCAGGGTAACCGAACTACTCCATCTTTTGTCGCATTCAATGAC 17271 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | | | |||||||||| || || |||| | | || || ||| || || Sbjct 17272 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAATCAGGTCGCTATGAACCCTCAAAACACC 17331 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || || || |||||||| ||||| | | || | ||| || |||||||| ||| Sbjct 17332 GTCTTCGACGCCAAACGTTTGATTGGCCGCAAGTTCGACGATCCGGAGGTTCAGGCTGAT 17391 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--- 550291 |||||||| | || ||| | | || | || ||||| ||| | ||| | Sbjct 17392 ATGAAGCACTTTCCCTTCAAGGTGATTGAAAGACAAGGCAAACC-TATGGTCAAGGTCGA 17450 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | ||| |||| | || |||| |||| ||| |||| || || ||| | | || Sbjct 17451 ATTCA--AAGGCGAAGAGAAGGAATTCACACCTGAAGAAATATCTTCCATGATCCTCATC 17508 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAGTAATAAC 550410 || ||| | | | ||| | || |||| || | || || || || | || Sbjct 17509 AAGATGCGCGAGATTG-CAGAGGGCTTCTTGGGCACATCGGTCCCGAGCGCTGTCGTCAC 17567 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || || || || || ||||| || || || ||||| || || || || || ||||| Sbjct 17568 TGTCCCCGCCTACTTCAACGACTCTCAGCGGCAGGCTACCAAGGACGCCGGTCGCATTGC 17627 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||||| || || |||||||| ||||| || |||||||| || || |||| ||||| || Sbjct 17628 CGGACTCAACGTCCTTCGTATCATCAACGAGCCTACTGCCGCCGCTATTGCCTATGGTCT 17687 Query 550531 TGATAA 550536 || || Sbjct 17688 CGACAA 17693 >seq2339 Length=71557 Score = 100 bits (110), Expect = 2e-15 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||| || || ||||| | ||| ||||| || || |||||||| ||| || || | Sbjct 18262 AGACGAAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAATC-GCTCAGCGTGCG 18320 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || ||||||||||||||||||| |||||| || ||||| || || || Sbjct 18321 GCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTC 18380 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 || || ||||| || ||| || || || || |||| || | || ||| | | Sbjct 18381 CTTGTCCTGAATCTTGGATTTGACATTGTCGATGGTGTCAG-AAGATTCCACTTCCAAGG 18439 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| ||| || ||||| | || || || |||||||||||| Sbjct 18440 TAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 18480 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||| || ||| || || ||||||||| || | | ||||| Sbjct 18490 AGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGG 18549 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || || |||||||| ||||||| || || ||||| ||||| ||||| Sbjct 18550 CCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGAATGCCTTCC 18609 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 ||||||||||| || ||||| || || ||||| | || | | ||| | || Sbjct 18610 TTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCG-AAGATTCGACTTCCAATGT 18668 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || ||| || ||||| | ||| || ||||| || |||||| Sbjct 18669 AATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATA 18708 >seq304 Length=167555 Score = 95.1 bits (104), Expect = 1e-13 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCA-AGCTACTAAAGATGCTGGACGTAT 550467 |||||||| || || |||||||| | || ||||| ||| || || |||||||| | || Sbjct 77290 ACTGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGC-ACCAAGGATGCTGGTCAGAT 77232 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || |||||||| ||| | |||| || || ||||||||||| ||||| ||||| Sbjct 77231 CGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTATGG 77172 Query 550528 ACTTGATAA 550536 ||||| || Sbjct 77171 TCTTGAGAA 77163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029096678281810