Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2339 131 1e-25 >seq2339 Length=71557 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | || ||||| || ||||| || || || |||||||| |||| Sbjct 18481 CCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGAC 18540 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | |||| || | ||||| || ||||| || | |||||||| || || ||| Sbjct 18541 AAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGA 18600 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||||||||| || |||||| | || | || || || | ||| ||| Sbjct 18601 ATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACT 18660 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || ||||| || ||||| || || || |||||||| Sbjct 18661 TCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || ||||| || | | || | | |||| || | ||| Sbjct 19037 TGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCAAGCTGC 19096 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | |||||| || || ||||| || || || ||||| ||||| || Sbjct 19097 TTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATCCTGAATCTTC 19156 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||||||||| || || || ||||| | || |||||||| Sbjct 19157 GACTTGACATTGTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTG 19216 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTAC 101475 | || || || || || ||||||| ||| Sbjct 19217 AGGGTCTTGACGAAGATTTGCATGGCTAC 19245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396260197075533