Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2389 421 1e-112 seq3515 149 1e-30 >seq2389 Length=61879 Score = 421 bits (466), Expect = 1e-112 Identities = 1085/1632 (66%), Gaps = 68/1632 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || |||||||||||| ||||| | ||||||||||| ||||| Sbjct 42871 ACGGTGAACTGGATGGGTGCAGCAGCAGCCTGCGTGCGCAAGTAGTACATGCCCGTCTTG 42812 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 || ||| |||||| | |||||| | |||| |||| | || || || Sbjct 42811 AGACCCAACTTCCAGCCAGCAAAGTGCATAGAGGTGA---TCTTGCCCATAGTA----GG 42759 Query 212673 TCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTG 212732 ||||| || || | ||| || ||||| |||||| || || | | | Sbjct 42758 --ATCCTT------CATGTGAACGTTGAGCGACTGGGACTGGTCGATAAAGGCACCGCGA 42707 Query 212733 TCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCT 212792 || || ||||| | || | || | ||| || | |||||| ||||||||| ||| | Sbjct 42706 TCGGCCGCCATCTGGATAACATGACGCTGAGAAATCTCCCAAACGGTCTTGTAGAGAGCC 42647 Query 212793 TTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCA--GCT 212850 |||| ||| | |||| |||||||||||| | || || || | | | || | | Sbjct 42646 TTGATGTCGGCGGGGATATTGGGGATGTTCTGAATGGAACC---GT-TCTCGGCAATGAT 42591 Query 212851 GCAGGCG--CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGG 212908 || | |||| | || |||||| ||| | | || ||||| || || Sbjct 42590 GCGGTTCTTCATGGCATCCGACCAGAGACCCATATCGACGAGATCCTTGAGGAGCCAGGG 42531 Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| | |||||| ||||| | | || | | |||||||| ||| || ||||| || Sbjct 42530 GTTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGG 42471 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||| | || ||| ||||| |||||||| || | ||| ||| |||||||||||||| | Sbjct 42470 CTCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAG 42411 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCA 213088 ||| | ||| | | |||||||| ||| | | || | |||| ||||| Sbjct 42410 CAGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCA 42351 Query 213089 TCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCT 213148 |||| ||| ||| || ||||||||||| ||||| | || |||| Sbjct 42350 CAACTCAGA-AGG--------CTTGACATTCCACATGTCGAACTGAAGAATACCTTCCGA 42300 Query 213149 CACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGC 213208 |||| ||||| | | | ||||||||||| ||||| ||||||||||| || || Sbjct 42299 GGCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTCAAGAGAGGC 42240 Query 213209 CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGG 213268 ||||||||||| ||||||||| || || |||| | ||||||||| |||||| || Sbjct 42239 TGTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGGGCCTCGGG 42180 Query 213269 GGACGTGAAGGGCATCATCATGCGTTGGAACA-CATCAGCCAGCCCCTGGACCCCGATGC 213327 ||| ||||||||| || | | ||| | | || || || ||||| || || | | Sbjct 42179 AGACTCGAAGGGCATGCGCA-GAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACAC 42121 Query 213328 CGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386 ||||||||| |||| || ||| ||| |||| |||||| | ||||||| |||| Sbjct 42120 CGATGGGTCGATGTCGCATGTTGCTGTTGCGAGC-CTCCTCAATGGGGTAATGGTTGACA 42062 Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGA 213446 || ||||||||||||||||| ||| | |||||| ||||| | | || | | Sbjct 42061 TCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTC------ 42008 Query 213447 TTGAACACGTAGCCCCC------GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGG 213500 | ||| |||||| || || | ||||| |||| || || | ||||| | Sbjct 42007 TGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACAAAGGCAGGAAGAGCAAGAGAGGCCAAG 41948 Query 213501 TTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTG 213560 ||||| || || ||||| | || | | |||||| |||||||| |||||||||||| | Sbjct 41947 TTGCACACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAG 41888 Query 213561 CATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGC 213620 | || ||||| |||||||||| ||||| |||| |||| | ||||||||| ||| Sbjct 41887 CTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGC 41828 Query 213621 ATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCC 213680 || ||||| || || ||| ||||||| | || || | |||||| | | ||| Sbjct 41827 ATAAAGGGGTTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGC- 41769 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAA 213739 || | | || | || ||| | | | ||| |||| |||||||| | | || Sbjct 41768 ---ACGAATAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAA 41712 Query 213740 TTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 || | ||| || | | | |||| || || || ||||||||||||| |||| | Sbjct 41711 CTCCTCGCCATAGCAATCAG-CCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAAT 41653 Query 213799 CCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 |||||| | | ||| | || |||||| || || |||| |||||| || ||| |||| Sbjct 41652 CCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGT 41593 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 | | | | | || ||| || ||| || |||| ||| ||||||||||| | | Sbjct 41592 CGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACAT 41533 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGT 213975 | |||||||| ||||| | ||||||||||| || || | || | ||||||||||||| Sbjct 41532 CTGCGTGCCAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGT 41473 Query 213976 CCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT- 214034 | || ||||| ||||||||| || || | ||| | | |||||||| ||| Sbjct 41472 CAACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGA-TGTG 41414 Query 214035 CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCC 214090 |||||||| || || ||||| ||||||| || | || ||| |||| | || Sbjct 41413 CCGTTGGTGCCGGCAATATAAGAGCCGGTAGCAC---GGATGC-GGTGGACGTTCAAGCC 41358 Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150 || ||||| || ||||||||||||||| ||| | | | ||| || ||| ||| | Sbjct 41357 GATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTC 41298 Query 214151 CATGCTGTCATC 214162 |||||||| || Sbjct 41297 AATGCTGTCGTC 41286 >seq3515 Length=139295 Score = 149 bits (164), Expect = 1e-30 Identities = 350/517 (68%), Gaps = 11/517 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || |||| ||||| |||||||||||||| || |||| || |||||||| Sbjct 85432 CTGATATTCTCCAACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCTC 85373 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTG-TTCCAGCA 47957 |||||| ||||||||||| || || |||| || | || ||| | ||| | Sbjct 85372 CATGAAATCGAAGGGGTTGGCGGTTTTGTACA-CCTTTTCGTTACCAAGAGCAACCAATA 85314 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG-G 48016 || |||| ||||| | || || |||| ||| || ||| ||||||||||| ||| | Sbjct 85313 GGCGATCGGCGACAAATTCAATATATTGCTTCATCAGTGTGGCGTTCATGCCTAGGAGAG 85254 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 |||| |||| ||||| || | |||||| | ||| || || || || | ||| Sbjct 85253 CACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATG 85195 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGC-GCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||| | || || || | | ||| || ||| | | | || || || Sbjct 85194 TCCTTGATTATTTGCT-TGCTGGCTCGGTGCTTAAGATGC---GAGTGCAACAGACATGC 85139 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| ||||||| || || || ||| ||| || ||||||||||| ||| || || Sbjct 85138 AAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTGGAGAAGGTGAGGCCGGG 85079 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || |||||||||||||| | || || | || |||||||||||| Sbjct 85078 CATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATGCC 85019 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGT-CTGAGATCC 48314 |||||| || ||||| || | | || |||| | | ||||| |||| |||| Sbjct 85018 CTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGA-ATCC 84960 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | || ||||||||||| || ||| |||||| || Sbjct 84959 AACGAATGGCCCAGTCTGCTTTTTTCCGGATGCAGGG 84923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931488913160960