Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2389 369 7e-97 seq3515 114 2e-20 >seq2389 Length=61879 Score = 369 bits (408), Expect = 7e-97 Identities = 869/1286 (68%), Gaps = 57/1286 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG-CCTCGGG 221475 |||||||||||||||||||||||||| |||||| ||||||||| ||| || ||||||| Sbjct 42238 GTCAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGGGCCTCGGG 42180 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||||||||| ||||| |||| ||||||| || ||||| || || | ||| Sbjct 42179 AGACTCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACC 42120 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCG-GCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 |||||| | |||| | ||||| | ||| ||| | || | ||| ||| |||||| Sbjct 42119 GATGGGTCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCA---ATGGGGTAATGGTTGAC 42063 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 || || | ||||||||||| | || |||| | |||||| ||||||||| Sbjct 42062 ATCAATGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAA 42003 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | | | || ||| || | | | || ||||| || || |||| Sbjct 42002 GTCGTA---------GCGGCCTTCTTTGTAG---TCGACAAAGGCAGGAAGAGCAAGAGA 41955 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||||| ||| ||||| || ||||| || | |||| |||||||| || || || Sbjct 41954 GGCCAAGTTGCACACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAG 41895 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || ||||| ||||||| || || || ||| | ||| || ||||| Sbjct 41894 GTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTT 41835 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||||||||| ||| || || ||| | | | || || || |||||| | Sbjct 41834 GTACAGCATAAAGGGGTTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCT- 41776 Query 221893 TCTGG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGAG 221949 ||||| | | | ||| | | | ||||| || ||||| | ||| |||| Sbjct 41775 TCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCT---CATACTTCTCGTAGAGAG 41719 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | | |||||| || || || || ||||||| || ||| | ||||||||| || Sbjct 41718 CCT--CAAACTCCTCGCCATAGCAATCAGCCAGGCCGGGGCACTCGTTGGGACACATGAG 41661 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 |||| | | ||| | || ||| | || ||||||||| || ||||||||||| || | Sbjct 41660 GGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAG 41601 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 ||||| || | | || | || ||| ||||| ||| || | || ||| | ||| || Sbjct 41600 GAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTC 41541 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||| | || |||||||| ||||| ||||||| ||| | || || |||||||||||||| Sbjct 41540 AAACACATCTGCGTGCCAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCC 41481 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGC-GTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 ||||| || || || | || | |||||||| ||||| | || | | |||| Sbjct 41480 GCCCTGGTCAACGTATCTGGC-AGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGT 41422 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGGCAGA 222306 ||||| ||||||||||| ||| || | ||| || | || | | ||| | Sbjct 41421 TGGATGTGCCGTTGGTGCCGGCAATATAAGAGCCGGTAGCAC---GGATGCGGTGGACGT 41365 Query 222307 -CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGA 222365 || |||||||||||| || || ||||||||||| ||| ||||||||||||| || Sbjct 41364 TCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGA 41305 Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425 | || || || ||| ||||| | || | || |||||||| |||| |||| ||| || Sbjct 41304 TACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAAGAAGACAGCTGACATTGGG 41245 Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC-CCCTAGACATCAGA 222484 || || |||||| || || || || |||||| || ||| ||| || ||||| || Sbjct 41244 GGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAG-AGCTTGCTGGACATGAGG 41186 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT-----CTGCATGGCGCATC 222539 | ||| || || | || | | |||||||| || ||| | ||| ||||| Sbjct 41185 TGGTAGGTTTCCAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCA-- 41128 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGAC---CCTTGGAGCTGGAGAGCAGGTACG 222596 | || ||||| ||| || | ||| || | | || | ||| | |||| || || | Sbjct 41127 TAAT---CATGTGCTGAGGTCGCTCGAC-GATCTTGCCGTTGAGTTTGAGA--AGATATG 41074 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACCACG 222655 || | |||||||||||||| |||||||| |||| || ||||||||| ||| || | | Sbjct 41073 ATCTCTCCAGAGTCTTGAAGCCAAAGTA-TTGATAGTTGAAGTCTCTGTCGTAGACAATG 41015 Query 222656 GCGGCGTCCAGCTCCGACTTGTGCTT 222681 |||| ||| |||||| |||||| || Sbjct 41014 GCGGAGTCAAGCTCCTCCTTGTGTTT 40989 >seq3515 Length=139295 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| |||| || || |||||||||||||||||||| ||||||||| | ||||| | | Sbjct 84990 AGCGCTTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGA 85049 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 | |||||||||||| || || |||||||| || ||| |||||||| || ||| Sbjct 85050 TTTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCCAACGAACTTATCT 85109 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 | | || |||||| | |||| ||| ||||| || ||| Sbjct 85110 CCCGTGATGAGGGTTTGCACACAGACTTTGCATGTCTG 85147 Score = 109 bits (120), Expect = 1e-18 Identities = 181/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| || ||| |||||| ||||||||||| |||||| Sbjct 84530 ATTTGGCAGATGTACAAGAAGGCCGAAGCCTCTTTCTGGACGGCCGAAGAGATCGATCTG 84589 Query 25537 GCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTT--TCTCA 25591 |||||||| || ||| ||| || ||| | | |||||| | | || ||||| Sbjct 84590 TCCAAGGACTTGCACGATTGGAACAACCGTCTGAGCGACGACGAGAAATACTTCATCTCA 84649 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || | |||||||||||||| || ||||| || || || || || || || ||| Sbjct 84650 --CACATTTTGGCATTCTTTGCTGCTTCTGACGGCATTGTCAATGAAAACTTGCTTGAGC 84707 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | | || || ||| |||||| || ||||| || |||||||| | Sbjct 84708 GTTTCAGCGGCGAGGTTCAGGTTCCGGAGGCTCGTTGCTTCTATGGATTCCAGATCATGA 84767 Query 25712 TCGAAAATGTGCACTCTGA 25730 | || ||| | |||||||| Sbjct 84768 TGGAGAATATTCACTCTGA 84786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928801039799360