Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2339 113 3e-19 seq304 86.0 4e-11 >seq2339 Length=71557 Score = 113 bits (124), Expect = 3e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || || |||||||| || || || || || |||| || || Sbjct 19019 CGAAGGCGGAGAACGAGGTGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTG 19078 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| ||||| ||||||||||| || || ||||| || || ||||| || ||||| Sbjct 19079 CGGCCATCCTCAAGCTGCTTTCCAGCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCC 19138 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||| || |||||||| |||||| |||||||| |||| | | | || || Sbjct 19139 TCCTTATCCTGAATCTTCGACTTGACATTGTCAATAGTGTCAGACGACTCGA-CCTCGAG 19197 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || |||||||| ||||| ||||| ||||| Sbjct 19198 AGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 19236 Score = 109 bits (120), Expect = 4e-18 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| ||||| || || ||||| | || ||||| || | || ||||| ||| || | Sbjct 18258 ACGCAGACGAAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAATC-GCTCAGCG 18316 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||||| || |||||||| ||||||||||| ||||| || || ||||| || | Sbjct 18317 TGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGC 18376 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | |||||||| |||||||| ||||||| || || || |||| | | | || || Sbjct 18377 CCTCCTTGTCCTGAATCTTGGATTTGACATTGTCGATGGTGTCAGAAGATTCCACTTCCA 18436 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||||||| || || || | ||||| || |||||||| Sbjct 18437 A-GGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTG 18476 Score = 100 bits (110), Expect = 2e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| ||||| ||||| ||| ||| || || ||| || || | ||||| Sbjct 18714 ACGGAGGCGGAGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGT 18773 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| ||||| || || | || || ||||||||||| || || Sbjct 18774 ACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGGATACC 18833 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| |||||||| |||||| || || || || | | ||||| Sbjct 18834 TTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAG 18893 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAAC 480760 ||| || || || ||||| | |||||| || Sbjct 18894 GGTGATGGTCTTTCCGGTCAAAGTCTTGAC 18923 Score = 95.1 bits (104), Expect = 8e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | ||| || ||| || || || ||| || || | | |||| Sbjct 18487 CGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTT 18546 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| || || ||||| || ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 18547 CGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGAATGCCT 18606 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||| ||||||||||| || ||| || || ||||| | | | | || ||| Sbjct 18607 TCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAA- 18665 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || | |||||| ||||| || || Sbjct 18666 TGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTG 18704 >seq304 Length=167555 Score = 86.0 bits (94), Expect = 4e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCA-AGCAACTAAAGATGCGGGAAGA 474802 ||||||| || || || ||||||||| |||| ||||| |||| | || ||||| || Sbjct 77292 TTACTGTACCTGCCTACTTTAATGATGCTCAGCGTCAGAGCACC-AAGGATGCTGGTCAG 77234 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || ||||| |||||| | ||| | | || || || || || || || ||||| ||| Sbjct 77233 ATCGCCGGTCTGAATGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCTGCTCTTGCCTAT 77174 Query 474863 GGTCTTGATAAGAATTCTGACAAA 474886 |||||||| ||| | | |||||| Sbjct 77173 GGTCTTGAGAAGGAGGCCGACAAA 77150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268017529302812