Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2389 279 6e-70 >seq2389 Length=61879 Score = 279 bits (308), Expect = 6e-70 Identities = 1160/1802 (64%), Gaps = 39/1802 (2%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| || || |||| || | ||||||| ||| | |||| || | Sbjct 41046 TACTTTGGCTTCAAGACTCTGGAGA-GATCATATCTTCTCAAACTCAACGGCAAGATCGT 41104 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || || ||| ||||| | ||||| || || |||| || || || ||||||| Sbjct 41105 CGAGCGACCTCAGCACATGATTATGCGCGTTGCGGTCGGTATTTGGGGAGACAACATTGA 41164 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 || ||||| || ||| || |||||| |||| | | ||| ||||| |||| Sbjct 41165 GCGCGTTTTGGAAACCTACCACCTCATGTCCAGCAAGCTCT--TCACCCACGCCTCACCT 41222 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 || |||||||| || ||||| || | ||| |||| ||| ||||| ||| || Sbjct 41223 ACACTCTTCAACGCCGGTACCCCCCAATGTCAGCTGTCTTCTTGTTTCCTAGTCGACATG 41282 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||| ||| || |||||||||| | ||||| | | ||||| ||||| ||| Sbjct 41283 AAGGACGACAGCATTGACGGTATCTACGACACTCTCAAGACCTGTGCCATGATCTCCAAG 41342 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 |||||| ||||| || || || |||| | | || | ||| |||| Sbjct 41343 ATGGCTGGTGGTATCGGCTTGAACGTCCACCGCATCCGTGCTACCGGCTCTTATATTGCC 41402 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || || ||| | || || ||||| |||||||| || || ||| ||| || Sbjct 41403 GGCACCAACGGCACATCCAACGGCATCATTCCCATGCTTCGTGTCTTCAACAACACTGCC 41462 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCG-CAAGGG-----GTCCATC-GCGGTCTACTTGGA 75615 | || || | || ||||| | |||| | || ||| || |||| | || Sbjct 41463 AGATACGTTGACCA----GGGCGGCAACAAGCGACCTGGTGCATTTGCCATCTATCTCGA 41518 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| || ||| | | || || ||||| || ||| ||||| || | ||||| Sbjct 41519 GCCTTGGCACGCAGATGTGTTTGACTTTCTTGATTTGCGAAAGAACCACGGCAAGGAAGA 41578 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 || | | || ||||| | |||||||| ||||| || ||||||||||| || Sbjct 41579 AAACCGTGCTCGCGACCTCTTCCTTGCTCTGTGGATCCCAGATCTCTTCATGAAGCGCGT 41638 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-G 75794 || || || | ||| | || | ||||| || || || || || | || | Sbjct 41639 CGAAAAGAACGGGGATTGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGATTG 41698 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATG 75854 | ||| ||||||||||| || |||||| |||||||| ||||| | | | Sbjct 41699 CTATGGC-GAGGAGTTTGAGGCTCTCTACGAGAAGTATGAGCGTGAGGGCCGTGGCCGCA 41757 Query 75855 CGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 |||| | | ||| | || | | ||| | | || ||| | || ||||| || || || Sbjct 41758 AGACTATTCGTGCC-CAGAAGCTCTGGTACTCCATCCTCGAGTCCCAGACAGAAACGGGC 41816 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | || | |||||| ||||||||||| || |||| ||||| ||||| ||||| ||||| Sbjct 41817 AACCCCTTTATGCTGTACAAGGATGCCTGCAACAGAAAGAGCAACCAGAAGAACCTGGGA 41876 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || || ||||| || || |||||||| || | |||||| | |||||| Sbjct 41877 ACCATTCGCAGCTCCAACCTGTGCACGGAGATCATTGAGTACTGTGCCCCTGATGAGGTT 41936 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA-AGAGACTCGCAC 76092 ||||| ||||| ||||| || | || ||||| | |||| | | | ||| | | Sbjct 41937 GCTGTGTGCAACTTGGCCTCTCTTGCTCTTCCTGCCTTTGTCGACTACAAAGAAGGCCGC 41996 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | || | | || || || || |||| | | || | || || ||| | Sbjct 41997 TAC-GACTTCCAGAAGCTCCACGAGGTCACTCAAGTGGTCGTCCGTAACCTCAACAAGAT 42055 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 |||||| || ||| ||| ||||| || || || || |||||||| |||| Sbjct 42056 CATTGATGTCAACCATTACCCCATTGAGGAGGCTCGCAACAGCAACATGCGACATCGACC 42115 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACGCATTTG 76271 || ||| | |||||||| ||||| || || | ||| || | ||| | | | || | Sbjct 42116 CATCGGTGTTGGTGTTCAGGGTCTTGCCGACGCTTTTCTTGCTCTGCGCATGCCC-TTCG 42174 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | || || ||| ||| | || | ||||| || ||||| || ||||| ||| Sbjct 42175 AGTCTCCCGAGGCCCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTGCCC 42234 Query 76332 TGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391 || || | ||| |||| ||| ||||| |||| || || |||| |||| Sbjct 42235 TGACAGCCTCTCTTGAGCTGGCCAAAGAGCAAGGCCCCTACTCTACCTTCAAGGGCTCTC 42294 Query 76392 CCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG 76451 |||| || |||| | |||||||| || |||||| || || || || || | | | Sbjct 42295 CCGCCTCGGAAGGTATTCTTCAGTTCGACATGTGG-AATGTCAAGCCTT-CTGAGTTGTG 42352 Query 76452 --ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TG 76507 | ||||| ||| ||||| | ||||||||| | ||| |||| ||| || || || Sbjct 42353 GGAGTGGGACAATCTGAAGGAGCAGATCAAGGAGCACGGTATTCGCAAC--TCGTTGCTG 42410 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || ||||| || ||||||||| | ||||| ||||||| ||||| |||||||| Sbjct 42411 CTCGCTCCCATGCCCACCGCCTCCACCTCGCAAATTCTGGGTAACAATGAGTGCTTTGAG 42470 Query 76568 CCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAAC 76627 |||||||| | ||||| |||| | | | | | || ||||| || | |||||| Sbjct 42471 CCATACACGTCCAACATTTACCAGCGCCGTGTCTTGGCTGGTGAATTCCAGGTCGTCAAC 42530 Query 76628 AAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 76687 ||| |||| || ||| | || ||||||||||| | | |||||| | | | Sbjct 42531 CCCTGGCTCCTCAAGGATCTCGTCGATATGGGTCTCTGGTCGGATGCCATGAAGAACCGC 42590 Query 76688 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAAT 76747 || | | | ||||||||||| || ||| | ||||||| | || |||||| | Sbjct 42591 ATCATTGCCGAGAACGGTTCCATTCAGAACATCCCCAATATCCCCGCCGACATCAAGGCT 42650 Query 76748 CTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGT 76807 |||||| || || ||||| || | |||| || | ||||| || ||||| Sbjct 42651 CTCTACAAGACCGTTTGGGAGATTTCTCAGCGTCATGTTATCCAGATGGCGGCCGATCGC 42710 Query 76808 GGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGT 76865 ||| ||| || || | |||| ||| | || | |||| | ||| || ||| Sbjct 42711 GGTGCCTTTATCGACC--AGTCCCAGTCGCTCAACGTTCACATGAAGGATCCTACTATGG 42768 Query 76866 CCAAGCTCTCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTAC 76924 |||| || | |||||||| | || || ||||| ||| ||||| || || |||||| Sbjct 42769 GCAAGATCACCTCTATGCACTTTGCTGGC-TGGAAGTTGGGTCTCAAGACGGGCATGTAC 42827 Query 76925 TA 76926 || Sbjct 42828 TA 42829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596541494114720