Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3515 123 7e-23 seq3424 105 2e-17 >seq3515 Length=139295 Score = 123 bits (136), Expect = 7e-23 Identities = 316/480 (66%), Gaps = 6/480 (1%) Strand=Plus/Plus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGT 133510 || ||| | |||||||| ||| ||||| ||||||||| | | || || || || Sbjct 84935 AAAAAAGCAGACTGGGCCATTCGTTGGATTCAGGACAAGGATTCCAGCTTCGCCCAGCGC 84994 Query 133511 CTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTT 133570 | || ||||| |||| || |||||||| || ||||| ||||| || ||| ||||| Sbjct 84995 TTGGTGGCTTTCGCTGCTGTGGAGGGCATCTTCTTCAGCGGTGCCTTTGCCTCGATTTTC 85054 Query 133571 TGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGG 133630 ||||| || ||||||||| | | || || || || || ||||||||||| || | Sbjct 85055 TGGCTCAAGAAGCGTGGTCTGATGCCCGGCCTCACCTTCTCCAACGAACTTATCTCCCGT 85114 Query 133631 GACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTC 133690 || |||| | ||||| || ||||| | | | ||||| | | ||| | | | Sbjct 85115 GATGAGGGTTTGCACACAGACTTTGCATGTCTGTTGCACTCGCATCTTAAGCACCGAGCC 85174 Query 133691 AAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATC 133750 | ||| | | || | || ||||| | || || |||| |||||| || ||| | Sbjct 85175 AGCAAGCAAATAATCAAGGACATTATCACCGACGCTGTTGGCATTGAGCAAGAGTTTTTG 85234 Query 133751 AATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATT 133810 | ||||||||||| | | | || ||||| | |||||| ||| |||||| Sbjct 85235 ACCGAGGCTCTGCCGTGTGCTCTCCTAGGCATGAACGCCACACTGATGAAGCAATATATT 85294 Query 133811 GAATTTGTAGCTGA---CAGATTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCC 133867 |||||||| || || | ||||| | || | ||| || ||| | ||| || Sbjct 85295 GAATTTGTCGCCGATCGCCTATTGGTTGCTC---TTGGTAACGAAAAGGTGTACAAAACC 85351 Query 133868 GCCAATCCATTCGACTGGATGGAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAG 133927 ||||| || ||||| | ||||||| |||| | | | ||||| || ||||||||| Sbjct 85352 GCCAACCCCTTCGATTTCATGGAGAACATTTCCTTGGGTGGCAAGACAAACTTCTTCGAG 85411 >seq3424 Length=96089 Score = 105 bits (116), Expect = 2e-17 Identities = 220/324 (68%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 302497 CCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTA-TTTCTTACGGTCATATC 302555 || || ||||| || | |||||||||| | | || | | |||| || ||| ||| Sbjct 3829 CCATCTTCGCCATACAAGAACTGAATGATATC-TCCTAATGAATTTCGCACAGTCCCATC 3887 Query 302556 ATAAC---CAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||| || ||| | ||||| | | ||||| | || |||||||| || ||||| Sbjct 3888 ATAACGTGCACTCAAA---TCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTATCCAGT 3944 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | | || || ||||| || || || ||||| | || ||| |||| || |||||||| Sbjct 3945 TTCGGCAGTCTTGACAGCAGTGTCGATAAGACCTTCTCGTCCAGCCATGGCGTGGAAGAA 4004 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| || || || | | | ||||| | || |||||||||||||| ||||| Sbjct 4005 AAACTCGGTAGGAGTGAGACCACGGAGATAGGAGTTTTCGACGAAACCACGCGCTTCGGG 4064 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || | |||| ||| ||||| || |||| || | || | |||| | || ||||| Sbjct 4065 GGAGTAGTCGTCCTTTGTAAAATGCGGCAATGTTCGGTATTTGAAGCCAAACGGAATACG 4124 Query 302793 CTTTCCATCAACGTTCTGCTGTCC 302816 ||| || || || ||||||| || Sbjct 4125 CTTGCCTTCCACAATCTGCTGACC 4148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471746525468153