Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2389 140 4e-27 seq3418 118 1e-20 seq606 113 6e-19 seq3515 93.3 5e-13 seq3424 86.0 8e-11 seq2665 86.0 8e-11 >seq2389 Length=61879 Score = 140 bits (154), Expect = 4e-27 Identities = 269/395 (68%), Gaps = 15/395 (4%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| ||||| | || |||| ||| ||||| || |||||||| | || |||||| Sbjct 41480 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTT 41421 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| |||||||||||| || | || | ||||| || || | ||| || || Sbjct 41420 GGATGTGCCGTTGGTGCCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 41361 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||| || || ||| ||||||||| | || || ||||| ||||||||||| || Sbjct 41360 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 41301 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || |||| |||||||||| || || || || || || || || | || Sbjct 41300 GTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAAGAAGACAGCTGACATTGGGGGGT 41241 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA 1630361 |||||||||||||| || || | || |||||| | || | |||||| || ||| Sbjct 41240 ACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTA 41181 Query 1630362 GGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGC 1630421 ||| | | |||||| | | | ||| || ||| ||| |||| || Sbjct 41180 GGTTTCCAAAACGCGCTCAA---TGTTGTC----TCCCCAA----ATA----CCGACCGC 41136 Query 1630422 GACGCGCATGAGCATGTACTGGGGCCGCTCGACGA 1630456 |||||||| | ||||| ||| || |||||||||| Sbjct 41135 AACGCGCATAATCATGTGCTGAGGTCGCTCGACGA 41101 Score = 100 bits (110), Expect = 3e-15 Identities = 283/437 (65%), Gaps = 10/437 (2%) Strand=Plus/Minus Query 1628169 GATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTCA 1628227 |||||| ||||||||||||| | || | || |||||||||| ||||||| | | Sbjct 41909 GATCTCCGTGCACAGGTTGGAGCTGCGAA-TGGTTCCCAGGTTCTTCTGGTTGCTCTTTC 41851 Query 1628228 GGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGA 1628287 |||| ||| ||||||| ||||| |||| ||| || || |||| | | ||| || Sbjct 41850 TGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCTGTCTGGGACTCGAGGA 41791 Query 1628288 TGGCCGACCAGATCTGGCGCGCGGGCACGAC-AGTCC-GCG--CGCGGCCCTNNNNNNNN 1628343 ||| |||||| || | ||||||| |||| ||| | ||||||| Sbjct 41790 TGGAGTACCAGAGCTTCTG----GGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTCA 41735 Query 1628344 NNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCG 1628403 ||||| || |||| ||||| || ||||||||| |||| Sbjct 41734 TACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCGGGGCACTCG 41675 Query 1628404 GACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACAC 1628463 ||||| | ||| | ||| || || | | |||| ||| ||||| || Sbjct 41674 TTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGGG 41615 Query 1628464 GTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTG 1628523 ||||||| || ||||||||||| || ||||| || |||||||||||||||||| Sbjct 41614 ATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCGC 41555 Query 1628524 AGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCC 1628583 | || || |||| | | || |||||||| ||||| || ||| |||||| || || Sbjct 41554 AAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTCGAGATAGATGGCAAATGCACCA 41495 Query 1628584 TTGCGCTTGCCGCCGCC 1628600 |||||| |||||| Sbjct 41494 GGTCGCTTGTTGCCGCC 41478 >seq3418 Length=94555 Score = 118 bits (130), Expect = 1e-20 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||| ||||| ||||| ||| |||| ||||| | ||||||||||||| Sbjct 53544 CCAACTACCTCGACATTAAGCCCCTGCTTGATGTTGGCTGCAAAACGGTGGCCAACATGA 53485 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 | ||||| ||||| || || || ||||||||||| || ||||||| Sbjct 53484 TTAAGGGAAAGTCACCTGAAGAAATCCGCAAGACTTTCAACATCA 53440 >seq606 Length=87998 Score = 113 bits (124), Expect = 6e-19 Identities = 256/379 (68%), Gaps = 12/379 (3%) Strand=Plus/Plus Query 18120 CGTCGGCTGCATCATCGACGGCGTGCCG--CCGTGCATGCCACTGGCCGAGGCCGACATC 18177 |||| ||||||||||||| | |||| ||| | |||| || | ||| | |||||| Sbjct 16077 CGTCTCCTGCATCATCGACAAC-TGCCCTCCCGGTCTTGCC-CTCGTCGAAGATGACATC 16134 Query 18178 CAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAG 18237 ||||| ||| | | || ||||| ||||||||| || | | || || |||||||| Sbjct 16135 CAGCCGCAGCTCAACCGCCGCCGGCCGGGCCAGTCGGCCATAACGACACCCCGCAACGAA 16194 Query 18238 CCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTC 18297 || |||| |||||| || ||||| ||| |||| || || ||| ||||| | Sbjct 16195 AAAGACAAGGTCACCATCCACTCTGGCACCGAGTTCGGCAAGACCCTAGGCACGCCCATT 16254 Query 18298 GGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGG-- 18355 ||| || ||||| ||||| |||||| ||||| ||||| | | | Sbjct 16255 TTGCTCACGGTCCCCAACGAAGACCAACGGCCCAAAGACTACGGCGACAAGACGATCGAT 16314 Query 18356 ---TGCCGCGGCCCTCA--CACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGC 18410 | || | |||| || |||||||||| || || | | |||||||||| ||||| Sbjct 16315 CTCTACCCCCGCCC-CAGCCACGCCGACTGGACATATCTCGAAAAGTACGGCACAAAGGC 16373 Query 18411 GTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || ||||| ||| || ||||||||||| || ||||| ||||||||||| Sbjct 16374 CAGCTCCGGCGGCGGCAGGAGCAGCGCCCGCGAGACAATCGCCCGCGTGGCCGCCGGCGC 16433 Query 18471 GGTCGCCGAGAAATGGCTC 18489 |||||||| || |||||| Sbjct 16434 CGTCGCCGATAAGTGGCTC 16452 Score = 102 bits (112), Expect = 1e-15 Identities = 118/155 (76%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 19040 CCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCT 19099 |||| | ||||||| ||||||||| ||||| ||||| ||||||| || | || || Sbjct 16665 CCAACACGACAGCACCGGCGGCACCGTGACCTGCGTCATCCGCAACGCCCCCTCTGGTCT 16724 Query 19100 CGGCGAGCCGTGC-TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCC 19158 ||||||||| ||| || || ||| |||| ||| ||| ||||| ||||| || |||| Sbjct 16725 CGGCGAGCC-TGCGTTCGATAAGCTCGAAGCCCTCATCGGGCACGCTATGCTTTCCATCC 16783 Query 19159 CGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTT 19193 | ||| ||||||| ||||| || ||| ||||||| Sbjct 16784 CCGCCGCCAAGGGCTTCGAAATCGGC-TCGGGTTT 16817 >seq3515 Length=139295 Score = 93.3 bits (102), Expect = 5e-13 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||| ||||| |||||||| | | || || |||||| | ||| ||||||| Sbjct 85411 CTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCTCCATGAAATCGAAGGGGTTGGC 85352 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 || ||||| ||||||| || || | | | ||||| ||||||||||| || || Sbjct 85351 GGTTTTGTACACCTTTTCGTTACCAAGAGCAACCAATAGGCGATCGGCGACAAATTCAAT 85292 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCAC 868896 || || ||| || |||||||||||| | ||| || |||||| | |||| ||| Sbjct 85291 ATATTGCTTCATCAGTGTGGCGTTCATGCCTAGGAGAGCACACGGCAGAGCCTCGGTCAA 85232 Query 868897 AAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 |||||||| ||| || | || || ||| ||| || Sbjct 85231 AAACTCTTGCTCAATGCCAACAGCGTCGGTGATAAT 85196 >seq3424 Length=96089 Score = 86.0 bits (94), Expect = 8e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCA-CAAGGTGGTGCCCATGCC 507696 ||||| ||||| ||| |||||| || |||||| | || | | | ||| | ||||| Sbjct 5123 AACCGTCAGCCCTCGTTGCACAAGGAGTCCATGATGGGTCATCGTGTTCGTGTC-ATGCC 5065 Query 507697 CGGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGG 507756 | ||| | || || ||||| |||| || ||||||||||||| || || || Sbjct 5064 CTACTCTACCTTCCGCTTGAACCTTTCCGTTACTTCACCCTACAACGCCGATTTCGATGG 5005 Query 507757 CGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGT 507807 |||||||||||| ||||||| ||||| |||||| | |||| || ||||| Sbjct 5004 TGACGAGATGAACTTGCACGTTCCCCAATCCGAGGAGACGCGTGCGGAGGT 4954 >seq2665 Length=97861 Score = 86.0 bits (94), Expect = 8e-11 Identities = 96/128 (75%), Gaps = 8/128 (6%) Strand=Plus/Minus Query 344181 GGTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACGAG-- 344238 ||| ||||||||||| ||||| |||||||| || ||||| || |||| ||| ||| Sbjct 36172 GGTTGCCTTCCCCACAGAGACAGTCTACGGTCTGGGCGCGGATGCCA----TGAGGAGCG 36117 Query 344239 --GCCGTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGC 344296 | ||| | |||||| |||| |||||| || || || |||||||| ||||||| | Sbjct 36116 GATCGGTGAAGGGCATCTACGAGGCCAAGGGGCGGCCATCAGACAACCCGCTCATTGTTC 36057 Query 344297 ACGTGGCC 344304 ||||| || Sbjct 36056 ACGTGTCC 36049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106829898209773