Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2389 233 2e-56 seq2339 113 4e-20 >seq2389 Length=61879 Score = 233 bits (258), Expect = 2e-56 Identities = 1066/1675 (64%), Gaps = 58/1675 (3%) Strand=Plus/Minus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGG-TATTGTTGCAATATTTT 138415 |||||||| ||||||||||| ||| | || | | || || ||||| | || || | Sbjct 42673 ATCTCCCAAACGGTCTTGTAGAGAGCCTTGATGTCGGCGGGGATATTGGGG--ATGTTCT 42616 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 ||||| ||||| | ||||||||||| || ||||| |||| | ||| || | Sbjct 42615 GAATGGAACCGTTCTCGGCAATGATGCGGTTCTTCATGGCATCCGACCAGAGACCCATAT 42556 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || | || || | || | ||| | |||||| |||||||| ||||| || || | Sbjct 42555 CGACGAGATCCTTGAGGAGCCAGGGGTTGACGACCTGGAATTCACCAGCCAAGACACGGC 42496 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | |||||||||| ||| | |||||||| | || ||||| |||||||| || | | Sbjct 42495 GCTGGTAAATGTTGGACGTGTATGGCTCAAAGCACTCATTGTTACCCAGAATTTGCGAGG 42436 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 ||| ||||| |||||| || | || | || || || | |||||| |||||| Sbjct 42435 TGGAGGCGGTGGGCATGGGAGCGAGCAGCAACGAGTTGCGAATACCGTGCTCCTTGATCT 42376 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| || ||| |||||||| || ||| || |||||||| ||| ||| Sbjct 42375 GCTCCTTCAGATTGTCCCACTCCCACAACTCAGAAGGCTTGACATTCCACATGTCGAACT 42316 Query 138716 GTA----ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCT 138771 | | || |||| | |||||| ||| | | | | | ||| || |||| Sbjct 42315 GAAGAATACCTTCCGAG----GCGGGAGAGCCCTTGAAGGTAGAGTAGGGGCCTTGCTCT 42260 Query 138772 TGCGCCAACTC----GTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 | |||| ||| | ||| | || ||| | | ||| || || ||| ||||| Sbjct 42259 TTGGCCAGCTCAAGAGAGGCTGTC----AGGGCAGCGTGGTAGATGGTCTCGAAGATCTG 42204 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAAC-GCGT 138886 || |||||| |||||||||| |||| | |||||||| || | | ||| |||| Sbjct 42203 CTTGTTGAGCTCACGGGCCTCGGGAGACTCGAAGGGCATGCGCAG-AGCAAGAAAAGCGT 42145 Query 138887 CGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG 138946 |||| || || || || || || |||| || ||||| |||| || ||| ||||| Sbjct 42144 CGGCAAGACCCTGAACACCAACACCGATGGGTCGATGTCGCATGTT----GCTGTTGCGA 42089 Query 138947 ----CTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 | || || || |||| ||| ||||| ||||| ||||| | || || |||||||| Sbjct 42088 GCCTCCTCAATGGGGTAATGGTTGACATCAATGATCTTGTTGAGGTTACGGACGACCACT 42029 Query 139003 TTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTC 139061 | ||| | | | | | | | || ||||| ||| | |||| |||||| | | | Sbjct 42028 TGAGTGACCT-CGTGGAGCTTCTGGAAGTCGTAGCGGCCTTCTTTGTAGTCGACAAAGGC 41970 Query 139062 GACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCT 139121 || | || ||||| | ||||||||| || || || || ||| | | Sbjct 41969 AGGAAG---------AGCAAGAGAGGCCAAGTTGCACACAGCAACCTCATCAGGGGCACA 41919 Query 139122 GTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATT 139181 ||| || | || || | |||| || | || || || | || | || || Sbjct 41918 GTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGTTCCCAGGTTCTTCTGGTT 41859 Query 139182 GCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGT 139241 ||| |||| ||| || ||||| ||||| |||||| | || |||| ||||| || | Sbjct 41858 GCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCTGTCTGGGA 41799 Query 139242 CTCTATAATGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGT 139297 ||| | ||| | | | | | | || | || ||| || | | | | Sbjct 41798 CTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTCTTGCGGCC----ACGGCCCT 41743 Query 139298 CGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGC 139357 | ||||| ||||| |||||||| | || || || || ||| |||| || || Sbjct 41742 CACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCGG 41683 Query 139358 GACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACA 139417 | |||| || ||||||||||| | ||| | |||||| | ||||||| ||||||| | Sbjct 41682 GGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGA 41623 Query 139418 GATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGT 139477 |||| || ||||||| ||| | | | ||||| || || |||||| || || Sbjct 41622 GATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGT 41563 Query 139478 TACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCA 139537 | | || | ||| || ||||| || || |||||||| || || ||||||||||| | Sbjct 41562 TCTTTCGCAAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTCGAGATAGATGGCAA 41503 Query 139538 TTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGC 139594 ||| || | | ||||| || || || |||| || ||| || ||||| || | Sbjct 41502 ATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACAC 41443 Query 139595 GCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCG 139652 | | ||| || | ||| | | ||| |||||||||| ||| || | | | Sbjct 41442 GAAGCATGGGAATGATGCCGTTGGATGTGCCGTTGGTGC--CGGCAATATAAGAGCCGGT 41385 Query 139653 AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712 ||| |||| | || || || | |||||| || || | | ||||| || | | || Sbjct 41384 AGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCCATCTTGGAGATCATGGCACA 41325 Query 139713 -ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 || | | || ||||| ||||| ||||||||||||| ||| ||| || || | Sbjct 41324 GGTCTTG-AGAGTGTCGTAGATACCGTCAATGCTGTCGTCCTTCATGTCGACTAGGAAAC 41266 Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831 | || || || || | | || ||||| || || ||||| ||||| |||| Sbjct 41265 AAGAAGACAGCTGACATTGGGGGGTACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGA 41206 Query 139832 ACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGA 139891 | | | | ||||| | | ||| ||||| | ||| | |||| | ||| | Sbjct 41205 AGAGCTTGCTGGACATGAGGTGGTAGGTTTCCAAAACGCGCTCAATGTTGTCTCCCCAAA 41146 Query 139892 TACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttt 139951 ||||||| | || ||||| | ||| || || || ||| | | | ||| | || || Sbjct 41145 TACCGACCGCAACGCGCATAATCATGTGCTGAGGTCGCTCGACGATCTTGCCGTTGAGTT 41086 Query 139952 ttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | ||||| |||| || |||||| |||||||||| ||||||||| || Sbjct 41085 TGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAAAGTATTGATAGTTGAAGTC 41031 >seq2339 Length=71557 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || || |||||||| | ||||| ||| | | Sbjct 18707 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCG 18648 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| ||||| || ||||| || || || || ||| Sbjct 18647 GATACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAA 18588 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||||||||| ||||| |||||| ||| |||| || || || Sbjct 18587 CAGCGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAAT 18528 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || ||||| |||| |||| || || Sbjct 18527 ATTCAGAAGGAGTCTACTCTGCATTTGGTCCTGCGTCTGCGAGGTGG 18481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449876404199320