Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3418 109 9e-18 seq3515 102 1e-15 seq2389 100 5e-15 seq2946 86.0 1e-10 >seq3418 Length=94555 Score = 109 bits (120), Expect = 9e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||| |||||||| || ||| | || ||||| || ||||||||| | | Sbjct 53544 CCAACTACCTCGACATTAAGCCCCTGCTTGATGTTGGCTGCAAAACGGTGGCCAACATGA 53485 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | ||||| ||||| || || || ||||||||||| || ||||||| Sbjct 53484 TTAAGGGAAAGTCACCTGAAGAAATCCGCAAGACTTTCAACATCA 53440 >seq3515 Length=139295 Score = 102 bits (112), Expect = 1e-15 Identities = 177/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| ||| || || || || |||||| ||||| |||||||| | | Sbjct 85443 ACGCCAGCCTTCTGATATTCTCCAACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAAG 85384 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010 || || |||||| | ||| |||||||| || ||| ||| ||| || || Sbjct 85383 GAAATGTTCTCCATGAAATCGAAGGGGTTGGCGGTTTTGTACACCTTTTCGTTACCAAGA 85324 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 || || ||| ||||| |||||||| |||||||| || || ||| || | |||||||| Sbjct 85323 GCAAC-CAAT-AGGCGATCGGCGACAAATTCAATATATTGCTTCATCAGTGTGGCGTTCA 85266 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||| | ||| || ||| ||||| | |||| | | |||||||| ||| || | || || Sbjct 85265 TGCCTAGGAGAGCACAC-GGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCG 85207 Query 794130 TCGATGATGAT 794140 ||| |||| || Sbjct 85206 TCGGTGATAAT 85196 >seq2389 Length=61879 Score = 100 bits (110), Expect = 5e-15 Identities = 260/395 (66%), Gaps = 15/395 (4%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || || | || |||| ||| ||||| || |||||||| | | |||||| Sbjct 41480 GCCCTGGTCAACGTATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTT 41421 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| |||||||||||| || | || | ||| | || || | ||| || || Sbjct 41420 GGATGTGCCGTTGGTGCCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAA 41361 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || || ||| ||||||||| | || || | || || || |||||||| || Sbjct 41360 GCCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACC 41301 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 || || |||| |||||||||| | || || || || || || | | || Sbjct 41300 GTCAATGCTGTCGTCCTTCATGTCGACTAGGAAACAAGAAGACAGCTGACATTGGGGGGT 41241 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||||| |||||||| || || | || ||| | || ||||||| | ||| Sbjct 41240 ACCGGCGTTGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGACATGAGGTGGTA 41181 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 ||| | | |||||| | | | ||| || ||| ||| |||| || Sbjct 41180 GGTTTCCAAAACGCGCTCAA-----TGTTG--TCTCCCCAA----ATA----CCGACCGC 41136 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGA 2073931 |||||||| ||||||| ||| ||||||||||||| Sbjct 41135 AACGCGCATAATCATGTGCTGAGGTCGCTCGACGA 41101 Score = 96.9 bits (106), Expect = 5e-14 Identities = 282/438 (64%), Gaps = 12/438 (3%) Strand=Plus/Minus Query 2071581 GACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 || ||| ||||||||||||| | || |||| |||||||||| ||||||||| | Sbjct 41909 GATCTCCGTGCACAGGTTGGAG--CTGCGAATGGTTCCCAGGTTCTTCTGGTTGCTCTTT 41852 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| ||| ||||||| |||||| |||| ||||| || |||| | | || | Sbjct 41851 CTGTTGCAGGCATCCTTGTACAGCATAAAGGGGTTGCCCGTTTCTGTCTGGGACTCGAGG 41792 Query 2071699 ATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCTNNNNNNN 2071754 |||| |||| | || |||||| | || ||| ||||||| Sbjct 41791 ATGGAGTACCAGA----GCTTCTGGGCACGAATAGTCTTGCGGCCACGGCCCTCACGCTC 41736 Query 2071755 NNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTC 2071814 |||| || ||||| | |||| | ||| || ||||||||| ||| Sbjct 41735 ATACTTCTCGTAGAGAGCCTCAAACTCCTCGCCATAGCAATCAGCCAGGCCGGGGCACTC 41676 Query 2071815 GGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCA 2071874 | || || | ||| | ||| || ||| | | ||||| ||| || || || Sbjct 41675 GTTGGGACACATGAGGGTCCAATCCCCGTTCTTTTCGACGCGCTTCATGAAGAGATCTGG 41616 Query 2071875 CGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTT 2071934 ||||||| | ||||| ||||| || ||||| || |||||||||||||||||| Sbjct 41615 GATCCACAGAGCAAGGAAGAGGTCGCGAGCACGGTTTTCTTCCTTGCCGTGGTTCTTTCG 41556 Query 2071935 CAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 || || || |||| | | || |||||||| ||||| || ||| |||||| || || Sbjct 41555 CAAATCAAGAAAGTCAAACACATCTGCGTGCCAAGGCTCGAGATAGATGGCAAATGCACC 41496 Query 2071995 CTTGCGCTTGCCGCCGCC 2072012 |||||| |||||| Sbjct 41495 AGGTCGCTTGTTGCCGCC 41478 >seq2946 Length=193591 Score = 86.0 bits (94), Expect = 1e-10 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| || |||||||||||||| || ||||| ||| | || ||||| || ||| Sbjct 28584 GTACTTGGTCACAGCCTTGGTACCCTCAGACACGGCATGCTTTGCAAGTTCACCAGGCAA 28643 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||||| ||| || | ||||||||| ||||| Sbjct 28644 GATCAAGCGAACAGAGGTCTGGATTTCGCG 28673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915845474279591