Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2339 188 1e-42 >seq2339 Length=71557 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || |||||| || || ||||||||||| || ||||| ||||| || || | Sbjct 18479 TACCACCTCGCAGACGCAGGACCAAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGG 18538 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||| || || || || || || || |||||||| |||| ||||| || || | Sbjct 18539 ACAAAGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGG 18598 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||||||||| | |||||||| || |||||||| || ||| | Sbjct 18599 GAATGCCTTCCTTATCTTGAATCTTAGACTTTACATTATCGATCGTATCCGAAGATTCGA 18658 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || |||||||| ||||| ||||| || || |||||||| Sbjct 18659 CTTCCAATGTAATAGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 18707 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| ||||||||||| ||||| ||||| || || || ||| | | || Sbjct 18721 CGGAGGACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCA 18780 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| ||||| | || || ||||| ||||| || |||||||| Sbjct 18781 TCTTCCAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTG 18840 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| | || ||||| || || || || | || || || | || || Sbjct 18841 TCCTGAATCTTCGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATG 18900 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| |||| | | ||||| Sbjct 18901 GTCTTTCCGGTCAAAGTCTTGACAACTGT-TGCAT 18934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981779787257691