Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2389 257 2e-63 seq2753 118 1e-21 seq2517 111 2e-19 seq3515 107 2e-18 seq2339 100 3e-16 >seq2389 Length=61879 Score = 257 bits (284), Expect = 2e-63 Identities = 994/1543 (64%), Gaps = 49/1543 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| || || || || | || || ||| | || | |||| ||| | || Sbjct 42529 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 42470 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||| ||||| |||| ||| |||| ||| | || ||||||||| || | | Sbjct 42469 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGC 42410 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 |||| ||||||||| | |||| | | || || | ||||||| |||| ||||| Sbjct 42409 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 42350 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 | | || || | || |||||||||||| |||| ||||| || ||||| | Sbjct 42349 AACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAATACCTTCCGAGGCGGGAGAG 42290 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCT-CGAGCGC 148558 |||| | | | ||| || || ||| | ||||| || || | || || || Sbjct 42289 CCCTTGAAGGTAGAGTAGGGGCCTTGCTCTTTGGCCAGCTC-AAGAGAGGCTGTCAGGGC 42231 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTC 148615 ||| ||| || |||||| || ||| |||||||| | | | | |||| || Sbjct 42230 AGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGC-TCACGG--GCCTCGGGAGACTC 42174 Query 148616 GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675 | | ||||| ||||| | ||| ||||||||||| ||||| || || || || ||||| Sbjct 42173 GAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATGGG 42114 Query 148676 CCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGAT 148735 || ||| |||||| | ||| || ||| | || || |||||| || ||||| Sbjct 42113 TCGATGTCGCATGTTGCTGTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAATGAT 42054 Query 148736 CTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTACTT 148795 ||||| || || || || ||||| | || | | | ||| | || ||||| Sbjct 42053 CTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGTAGCG 41994 Query 148796 GTCATCTACGATG----CATCGGTTCACG----GCGATAGAGGCTAGATTGCACACGGCC 148847 | | ||| | | || || || | || | |||||| | |||||||| || Sbjct 41993 GCCTTCTTTGTAGTCGACAAAGG--CAGGAAGAGCAAGAGAGGCCAAGTTGCACACAGCA 41936 Query 148848 GTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGCATTTGATC 148904 |||||| ||||| | |||||| | |||||| | |||||| || ||||| || | Sbjct 41935 ACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGCGAATGGT- 41877 Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964 |||| |||||| || |||||||| |||||||| || |||||||||||||| | || Sbjct 41876 --TCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAAAGGGG 41819 Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGGTCCTGCGCGCGCA----C 149020 ||| ||||| ||| | || | ||| | || | ||| || || | | Sbjct 41818 TTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAATAGTC 41759 Query 149021 TTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCG 149078 |||| || || ||||| |||| || | ||| | ||| ||| ||| ||||| Sbjct 41758 TTGCGGC----CACGGCCCTCACGCTCATACTTCTCGTAGAGAGC--CTCAAACTCCTCG 41705 Query 149079 CCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCC 149138 || |||||||| | || |||||||||| || || |||||||| | ||| | |||| | Sbjct 41704 CCATAGCAATCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTC 41645 Query 149139 GCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCC 149198 | ||||||||||| || ||||| || | ||| || || | ||||||||| || Sbjct 41644 TTTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCA 41585 Query 149199 TTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGC 149258 | ||||| ||| ||| |||| | || | | || | || |||||| Sbjct 41584 CGGTTTTCTTCCTTGCCGTGGTTCTTTCGCAAATCAAGAAAGTCAAACACATCTGCGTGC 41525 Query 149259 CACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGG 149315 || ||||| | || | || | || || ||| |||||||||||||| |||| Sbjct 41524 CAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACGTAT 41465 Query 149316 CGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTA 149375 | | ||||||| || || |||| ||| || ||||| ||| |||||||| || Sbjct 41464 CTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCCGTTGGTG 41405 Query 149376 GAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCC 149434 | ||| | |||| || || | ||| ||||| | |||||| || || ||| Sbjct 41404 CCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCAGCC 41345 Query 149435 GTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCG 149494 | ||| ||||| || ||| ||| || |||||| || || ||||||||| Sbjct 41344 AT-CTTGGAGATCATGGCACAGGTCTTGAGAGTGTCGTAGATACCGTCAATGCTGTCGTC 41286 Query 149495 CTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAA---ACGCGTGCCGGCCGCGAA 149551 ||||||| | || || || || ||| || || | | || ||||| ||| Sbjct 41285 CTTCATGTCGACTAGGAAACAAGAAGACA---GCTGACATTGGGGGGTACCGGCGTTGAA 41229 Query 149552 CATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCA 149610 | || || |||||| || || | || |||| ||| | | ||| | || | | Sbjct 41228 GAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGG-ACATGAGGTGGTAGGTTTCCAAAA 41170 Query 149611 CGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTC 149670 |||| || |||| || || || || | || |||||||| | ||| ||||| |||| Sbjct 41169 CGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTGAGGTC 41110 Query 149671 GCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAA 149730 |||| | | ||| | |||||| | || | || || |||||| |||||| Sbjct 41109 GCTCGACGATCTTGCCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGAAGCCAA 41050 Query 149731 AGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 |||| | |||| ||||| | | ||| | ||||||||| ||| Sbjct 41049 AGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGCGGAGTC 41007 >seq2753 Length=281039 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| |||| || ||| | | | |||||||| Sbjct 117987 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA-TCCTCGAG 117929 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || || |||||||| || || ||||| |||||||| ||| Sbjct 117928 CTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGAT 117869 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||||| | |||||| || | ||||| || || || Sbjct 117868 CTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCC 117809 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 117808 CGTGAGGGTTTTGACGAAAATCTGCAT 117782 >seq2517 Length=100120 Score = 111 bits (122), Expect = 2e-19 Identities = 145/197 (74%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || || ||| |||||| ||||||||||| ||| | || Sbjct 66509 TTCTGAATGTTGTAGTCGGACAGGGTTCGACC-GTCCTCAAGCTGCTTGCCAGCGAAGAT 66451 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || || ||||| |||||||| ||| || ||||| | || Sbjct 66450 CAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCTTGGATTTTGGACTTGACATTGTC 66391 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||| | || ||| || || | ||||| ||| ||||| |||||||| || ||||| Sbjct 66390 GATCGTGTCCGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACGAA 66331 Query 133652 AATCTGCATGGCTTATT 133668 | ||| |||| |||| Sbjct 66330 A--CTGGATGGTGTATT 66316 >seq3515 Length=139295 Score = 107 bits (118), Expect = 2e-18 Identities = 337/517 (65%), Gaps = 19/517 (4%) Strand=Plus/Minus Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414 || || || || |||||||| || |||||||| ||||| ||| |||||||| | ||| Sbjct 85428 TATTCTCCAACTCGTTTCTCGAAGAAGTTTGTCTTGCCACCCAAGGAAATGTTCTCCATG 85369 Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTA-----TTTCGGCTGGCCCAACTGTACGAGCA 120469 || ||||| |||||| ||| | ||| ||||| | || | || | | Sbjct 85368 AAATCGAAGGGGTTG---GCGGTTTTGTACACCTTTTCG--TTACCAAGAGCAACCAATA 85314 Query 120470 GTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCG-CGTTCATGCCCAGCAAC 120528 | || || || ||||| ||||| || | ||| | || | |||||||||| || | Sbjct 85313 GGCGATCGGCGACAAATTCAATATATTGCTTCATC-AGTGTGGCGTTCATGCCTAGGAGA 85255 Query 120529 GCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 || ||||| ||| || |||||||| | ||||||| | || || || ||| ||| Sbjct 85254 GCACACGGCAGAGCCTCGGTCAAAAACTCTTGCTCAATGCCAACAGCGTCGGTGATAATG 85195 Query 120589 GCGAGCATAGTGTGGCCG--GGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACG 120646 | || | || | ||| || | |||||| || | |||| || | Sbjct 85194 TCCTTGATTATTTGCTTGCTGGCTCGGTGCTTAAGATGCGAGTGCA-----ACAGACATG 85140 Query 120647 CAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGG 120706 ||||||| ||||||| ||||| || || || || || |||||| || || ||||||| Sbjct 85139 CAAAGTCTGTGTGCAAACCCTCATCACGGGAGATAAGTTCGTTGGAGAAGGTGAGGCCGG 85080 Query 120707 GCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGC 120766 |||| | || | |||||| |||| || | ||||||| || ||||| | || Sbjct 85079 GCATCAGACCACGCTTCTTGAGCCAGAAAATCGAGGCAAAGGCACCGCTGAAGAAGATGC 85020 Query 120767 CCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCC 120826 ||||||| || || || |||| ||||| ||| || | | |||| | |||| Sbjct 85019 CCTCCACAGCAGCGAAAGCCACCAAGCGCTGGGCGAAGCTGGAATCCTTGTCCTGAATCC 84960 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 | |||||||| || || ||||| || | ||| || Sbjct 84959 AACGAATGGCCCAGTCTGCTTTTTTCCGGATGCAGGG 84923 >seq2339 Length=71557 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | ||| | | | ||||| |||||||| || Sbjct 19043 GTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCA-TCCTCAAGCTGCTTTCC 19101 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || ||||| || ||||| || ||||| ||| Sbjct 19102 AGCGAAGATTAGACGCTGCTGGTCAGGCGGGATTCCCTCCTTATCCTGAATCTTCGACTT 19161 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||| || |||| || | ||| |||||||| || || Sbjct 19162 GACATTGTCAATAGTGTCAGACGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGGGT 19221 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| || ||||||||| Sbjct 19222 CTTGACGAAGATTTGCATGGCT 19243 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||| || ||||| || |||||||||| || |||| ||| || ||||| Sbjct 18276 ATGCAAGGTGCTTTCCTTCTGGATGTTGTAATCGCTCAGCGTGCGGCCGTCTTCCAGCTG 18335 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || |||| || || |||||||||||||||||||| |||||||| ||||| Sbjct 18336 CTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 18395 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | || | ||||| | | ||||| || | ||| | || || || || Sbjct 18396 GGATTTGACATTGTCGATGGTGTCAGAAGATTCCACTTCCAAGGTAATAGTCTTTCCAGT 18455 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| ||||| Sbjct 18456 CAAGGTCTTGACAAAAATTTGCAT 18479 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| |||||||| ||| | || | | | || || ||||||||||| Sbjct 18739 GTAGATTCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCA-TCTTCCAGCTGCTTGCC 18797 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||| || |||||||| ||||||||||| ||||| ||| Sbjct 18798 AGCGAAGATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTCGACTT 18857 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| || ||| || || | ||||| ||| || ||||||| ||| Sbjct 18858 GACATTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGT 18917 Query 133643 TTTTAC 133648 || || Sbjct 18918 CTTGAC 18923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| |||||||| ||| || || | | | |||||||| Sbjct 18502 AAATGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCA-TCCTCGAG 18560 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || || ||||| ||||| || || ||||||||||| || || Sbjct 18561 CTGCTTCCCGGCAAAGATAAGTCGCTGTTGGTCAGGGGGAATGCCTTCCTTATCTTGAAT 18620 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | ||| || | | || || || | || | || ||||| Sbjct 18621 CTTAGACTTTACATTATCGATCGTATCCGAAGATTCGACTTCCAATGTAATAGTCTTGCC 18680 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| || ||||| |||||||| Sbjct 18681 AGTCAAAGTCTTGACGAAGATCTGCAT 18707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483398024837560