Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2389 105 2e-17 >seq2389 Length=61879 Score = 105 bits (116), Expect = 2e-17 Identities = 210/308 (68%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA--- 110745 |||| ||| | | ||||||||| ||||||| | ||| || | || || || || | Sbjct 41431 TTCCCATGCTTCGTGTCTTCAACAACACTGCCAGATACGTTGACCAGGGCGGCAACAAGC 41490 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 || ||| ||||||| ||||||||||| |||||||| ||||| | ||||| || | | Sbjct 41491 GACCTGGTGCATTTGCCATCTATCTCGAGCCTTGGCACGCAGATGTGTTTGACTTTCTTG 41550 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | | || || || || || |||||| | | || || || | || ||| ||| Sbjct 41551 ATTTGCGAAAGAACCACGGCAAGGAAGAAAACCGTGCTCGCGACCTCTTCCTTGCTCTGT 41610 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 |||| ||||| | |||||||| || || || | || || ||| | || ||||||| Sbjct 41611 GGATCCCAGATCTCTTCATGAAGCGCGTCGAAAAGAACGGGGATTGGACCCTCATGTGTC 41670 Query 110926 CTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 | || || | || || || ||||| ||||| | |||||||| | || ||||| Sbjct 41671 C-CAACGAGTGCCCCGGCCTGGCTGATTGCTATGGCGAGGAGTTTGAGGCTCTCTACGAG 41729 Query 110985 AAATATGA 110992 || ||||| Sbjct 41730 AAGTATGA 41737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186755488439009