Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2339 102 5e-17 >seq2339 Length=71557 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| | ||| | ||||| || || || |||||||||||| Sbjct 18252 ACCACCACGCAGACGAAGCACGAGATGCAAGGTGCTTTCCTTCTGGATGTTGTAATCGCT 18311 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| |||| || |||||||||||||| | || ||||| || | || Sbjct 18312 CAGCGTGCGGCCGTCTTCCAGCTGCTTTCCGGCAAAAATAAGTCGTTGCTGGTCGGGAGG 18371 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || | || |||| ||| | |||||| ||||||| Sbjct 18372 GATGCCCTCCTTGTCCTGAATCTT-GGATTTGACATTGTCGATGGTGTCAGAAGATTCCA 18430 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || ||||| || |||||| Sbjct 18431 CTTCCAAGGTAATAGTCTTTCCAGTCAAGGTCTTGACAAAAATTTGCATA 18480 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/204 (71%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || ||||| |||||||| || || | || |||| || || || || || Sbjct 18745 TCCTTCTGAATATTGTAGTCGGAGAGAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAG 18804 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| ||||||||||| | || | |||||| ||||| ||| ||| | | |||| Sbjct 18805 ATCAATCGCTGCTGATCAGGAGGGATACCTTCCTTGTCCTGAATCTTC-GACTTGACATT 18863 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||||| || || || |||| ||||| || || || || || || || || Sbjct 18864 GTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 18923 Query 33738 AAAGATCTGCAT--AGTTGGTGTG 33759 || | ||||| |||| ||||| Sbjct 18924 AACTGT-TGCATAGAGTTAGTGTG 18946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328688901084480