Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2339 113 1e-19 >seq2339 Length=71557 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || || || |||||||| ||| ||| || Sbjct 18704 CAGATCTTCGTCAAGACTTTGACTGGCAAGACTATTACATTGGAAGTCGAATCTTCGGAT 18645 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| || ||||| ||| || ||| || Sbjct 18644 ACGATCGATAATGTAAAGTCTAAGATTCAAGATAAGGAAGGCATTCCCCCTGACCAACAG 18585 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||| ||||| |||||| | || ||||| | |||||| |||| ||||| | Sbjct 18584 CGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGAACTTTGTCCGACTACAATATT 18525 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||||||||| || Sbjct 18524 CAGAAGGAGTCTACTCTGCA 18505 Score = 102 bits (112), Expect = 2e-16 Identities = 133/183 (73%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || ||||| || || || |||||||||||| ||||||||| | Sbjct 18471 TTTTGTCAAGACCTTGACTGGAAAGACTATTACCTTGGAAGTGGAATCTTCTGACACCAT 18412 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || || |||||||| || || || || || || ||| ||| |||| Sbjct 18411 CGACAATGTCAAATCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGACT 18352 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||| || |||||||||||| ||||||| || | || || |||||||||| ||||||| Sbjct 18351 TATTTTTGCCGGAAAGCAGCTGGAAGACGGCCGCACGCTGAGCGATTACAACATCCAGAA 18292 Query 206358 AGA 206360 || Sbjct 18291 GGA 18289 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| | || || || || ||||| |||| || ||| Sbjct 18911 ACCGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCG 18852 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || || ||||| || || || || || | |||||||| || ||| Sbjct 18851 AAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAGCAGCGATTGATCTTCGCTGGCAAG 18792 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | |||| ||||| | ||||| || |||||||||||| Sbjct 18791 CAGCTGGAAGATGGCCGTACTCTCTCCGACTACAATATTCAGAAGGAATCTACTCTTCAC 18732 Query 206374 CTTGT 206378 ||||| Sbjct 18731 CTTGT 18727 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 || ||||||||||| ||||| | ||| ||||| | |||||| | ||||| || |||||| Sbjct 18505 TGCAGAGTAGACTCCTTCTGAATATTGTAGTCGGACAAAGTTCGGCCATCCTCGAGCTGC 18564 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTG 204855 || ||||| |||||||| || ||||| Sbjct 18565 TTCCCGGCAAAGATAAGTCGCTGTTG 18590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181763729504249