Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Epichloe_20festucae_20[genbank_20GCA_5F002163435.1_202017-06-01] 3,769 sequences; 35,655,008 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2389 208 7e-49 seq2753 95.1 1e-14 >seq2389 Length=61879 Score = 208 bits (230), Expect = 7e-49 Identities = 990/1543 (64%), Gaps = 55/1543 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || || || || |||| ||||| | | || | ||| ||| | ||| Sbjct 42529 TTGACGACCTGGAATTCACCAGCCAAGACACGGCGCTGGTAAATGTTGGACGTGTATGGC 42470 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| ||||||| || || | ||||| | |||| ||||| |||||| || | | Sbjct 42469 TCAAAGCACTCATTGTTACCCAGAATTTGCGAGGTGGAGGCGGTGGGCATGGGAGCGAGC 42410 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || || || | ||||| | | ||| | ||||||| | | | ||| |||||| Sbjct 42409 AGCAACGAGTTGCGAATACCGTGCTCCTTGATCTGCTCCTTCAGATTGTCCCACTCCCAC 42350 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCT--CGACTGGCGGGAC 147130 | | || ||| | || |||||||||||| |||| || | ||| ||| ||||||| Sbjct 42349 AACTCAGAAGGCTTGACATTCCACATGTCGAACTGAAGAATACCTTCCGA--GGCGGGAG 42292 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGC-TGCGCCAATTCACAGCTTGCCT-CGAG 147188 ||| ||| |||| |||| || | || | | |||| ||| || | || || Sbjct 42291 AGCCCTTGAAGGTAGAGTAGGGGCC-TTGCTCTTTGGCCAGCTCA-AGAGAGGCTGTCAG 42234 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTC 147246 || | | ||| ||||| ||| ||| || ||||| || |||| || || | Sbjct 42233 GGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGG--GCCTCGGGAGAC 42176 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| | ||||| |||||| | ||| || ||||| | |||||| | ||| || ||||| Sbjct 42175 TCGAAGGGCATGCGCAGAGCAAGAAAAGCGTCGGCAAGACCCTGAACACCAACACCGATG 42116 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGC--TCGCTATGGGATAGTGGTTGCGATCAA 147364 |||||||| |||||| | | || || | | ||||| || |||||| ||||| Sbjct 42115 GGTCGATGTCGCATGTTGCT--GTTGCGAGCCTCCTCAATGGGGTAATGGTTGACATCAA 42058 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 | ||||||||||||||||| || || |||| ||| | | ||| |||| ||| || | Sbjct 42057 TGATCTTGTTGAGGTTACGGACGACCACTTGAGTGACCTCGTGGAGCTTCTGGAAGTCGT 41998 Query 147425 AAGTCCCGTCT------TCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGC 147478 | || ||| |||||| | ||| || | || | ||| |||| |||| Sbjct 41997 AGCGGCCTTCTTTGTAGTCGACA--AAGGCA--GG--AAGAGCAAGAGAGGCCAAGTTGC 41944 Query 147479 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATT 147538 | || || ||| || | | | | ||||| | ||| || | |||||||||| || Sbjct 41943 ACACAGCAACCTCATCAGGGGCACAGTACTCAATGATCTCCGTGCACAGGTTGGAGCTGC 41884 Query 147539 TTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGT 147598 ||| ||||| || | ||| ||||| || | ||||| || || ||| | ||||| Sbjct 41883 GAATGGTTCCCAGGTTCTTCTGGTTGCTCTTTCTGTTGCAGGCATCCTTGTACAGCATAA 41824 Query 147599 ACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCA 147658 | || ||| || || || | || | ||| | || | ||| || || | Sbjct 41823 AGGGGTTGCCCGTTTCTGTCTGGGACTCGAGGATGGAGTACCAGAGCTTCTGGGCACGAA 41764 Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 || || |||||||| || ||| |||||| | ||||||||| |||| Sbjct 41763 TAGTCTTGCGGCCACGGCCCTCACGCTCATACTTCTCGTAGAGAGCCTCAAACTCCTCGC 41704 Query 147719 CGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCG 147778 | |||||||| || |||||||| |||| | |||||||| || | ||| ||| | Sbjct 41703 CATAGCAATCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAATCCCCGTTCT 41644 Query 147779 CGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG----C 147834 | ||||| ||| || ||||| || | |||||| || | || ||||| | Sbjct 41643 TTTCGACGCGCTTCATGAAGAGATCTGGGATCCACAGAGCAAGGAAGAGGTCGCGAGCAC 41584 Query 147835 GCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCG 147894 | ||| | |||| | || | || || ||||| ||| | | | | | || ||| Sbjct 41583 GGTTTTC-TTCCTTGCCGTGGTTCTTTCG---CAAATCAAGAAAGTCAAACACATCTGCG 41528 Query 147895 TGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACA 147951 ||||| || || | |||| ||| | ||||| ||| || ||||||||||| || Sbjct 41527 TGCCAAGGCTCGAGATAGATGGCAAATGCACCAGGTCGCTTGTTGCCGCCCTGGTCAACG 41468 Query 147952 TGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTG 148011 | | | ||||||| || || || | |||||| | |||| | | ||||||||| Sbjct 41467 TATCTGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGATGCCGTTGGATGTGCCGTTG 41408 Query 148012 GTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC- 148070 ||| || | |||| || || | ||| ||||| | ||| || || || Sbjct 41407 GTGCCGGCAATATAAGAGCCGGTAGCACGGATGCGGTGGACGTTCAAGCCGATACCACCA 41348 Query 148071 GCCGTACTTTGA---TATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCT 148127 ||| | ||| || |||||| | | | | |||| |||||| ||||| ||||| Sbjct 41347 GCCAT-CTTGGAGATCATGGCACAGGTCTTG-AGAGTGTC--GTAGATACCGTCAATGCT 41292 Query 148128 GTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG- 148186 ||||| || | | | | | ||||| ||| ||| || | | | | | ||| || Sbjct 41291 GTCGTCCTTCATGTCGACTAGGAAACAAGAAGACAGCTG-ACATTGGGGGGTACCGGCGT 41233 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTC 148244 ||| || || || ||||| || || | || | || ||| | | | || || || Sbjct 41232 TGAAGAGTGTAGGTGAGGCGTGGGTGAAGAGCTTGCTGGA--CATGAGGTGGTAGGTTTC 41175 Query 148245 AATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTG 148304 | | || || |||| ||| || ||| || | ||| |||||||| | ||||||||| Sbjct 41174 CAAAACGCGCTCAATGTTGTCTCCCCAAATACCGACCGCAACGCGCATAATCATGTGCTG 41115 Query 148305 TGGTCGTTCGGC-AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGT 148363 ||||| ||| | | |||| ||||| |||||||||||| | || || || ||| Sbjct 41114 AGGTCGCTCGACGATCTTG-CCGTTGAGTTTGAGAAGATATGATCTCTCCAGAGTCTTGA 41056 Query 148364 AACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 | |||||||| | || | || ||| ||||| | ||||| Sbjct 41055 AGCCAAAGTATTGATAGTTGAAGTCTCTGTCGTAGACAATGGC 41013 >seq2753 Length=281039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| ||||| || | | | ||| || || |||||||||||||||| ||| Sbjct 118003 ACGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 117944 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| ||||| | | |||| || || || || || || || ||||| Sbjct 117943 GCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGTTGCTGGTCCGGGGGAATGCC 117884 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 117883 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 117824 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || ||||| | |||||||||||| Sbjct 117823 GGTGATCGTCTTCCCCGTGAGGGTTTTGACGAAAATCTGCAT 117782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476588745654840